LOCUS AK289651 2973 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76736 complete cds, highly similar to Homo
sapiens sphingomyelin phosphodiesterase 3, neutral membrane
(neutral sphingomyelinase II) (SMPD3), mRNA.
ACCESSION AK289651
VERSION AK289651.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2973)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2973
/clone="BRAMY2032644"
/clone_lib="BRAMY2"
/db_xref="H-InvDB:HIT000422448"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 424..2391
/codon_start=1
/note="highly similar to Homo sapiens sphingomyelin
phosphodiesterase 3, neutral membrane (neutral
sphingomyelinase II) (SMPD3), mRNA"
/protein_id="BAF82340.1"
/transl_table=1
/translation="MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYE
KRQRADDPCCLQLLCTALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLED
KGLAGGAALLSEWKGTGPGKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRN
GAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR
HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR
SQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAA
ARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQLHGYFEYILYDVGVY
GCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGALFLKVQVGSTPQD
QRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAANPEELVAFDVVC
GDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGLYDEDVCTPD
NLQKVLESEEGRREYLAFPTSKSSGQKGRKELLKGNGRRIDYMLHAEEGLCPDWKAEV
EEFSFITQLSGLTDHLPVAMRLMVSSGEEEA"
BASE COUNT 559 a 986 c 906 g 522 t
ORIGIN
1 agctgagtct gagggaggct ccggacccga gagccgcgag agccgccgcc gctgcggccg
61 ccgccagatc tgcggccggg agcccgggct gtgaggagcc gggaggagcg gggtgcgctg
121 ccgggcgctg accgccctcc cgcccgccgt cagaggtctg cggtgacagc tcttcttcag
181 agagaaggac aacaaggtcc cagtggcccc tcctcagggt ctgcagtagg cctccgcatg
241 gcccaccgag gtgaaccatg accggctggc caacattcgc cattgaccag ccggagttgc
301 atctcgccag gaggtgaccc ctcctccagc tgcccccaac tcgcccaccc tcgcccagga
361 aagtgcccgc agctgccacg gacaccatgt agtagggccg gctgcggcgc ccagtgagct
421 gcgatggttt tgtacacgac cccctttcct aacagctgtc tgtccgccct gcactgtgtg
481 tcctgggccc ttatctttcc atgctactgg ctggtggacc ggctcgctgc ctccttcata
541 cccaccacct acgagaagcg ccagcgggca gacgacccgt gctgcctgca gctgctctgc
601 actgccctct tcacgcccat ctacctggcc ctcctggtgg cctcgctgcc ctttgcgttt
661 ctcggctttc tcttctggtc cccactgcag tcggcccgcc ggccctacat ctattcacgg
721 ctggaagaca agggcctggc cggtggggca gccctgctca gtgaatggaa gggcacgggg
781 cctggcaaaa gcttctgctt tgccactgcc aacgtctgcc tcctgcccga ctcactcgcc
841 agggtcaaca acctttttaa cacccaagcg cgggccaagg agatcgggca gagaatccgc
901 aatggggccg cccggcccca gatcaaaatt tacatcgact cccccaccaa tacctccatc
961 agcgccgcta gcttcagcag cctggtgtca ccacagggcg gcgatggggt ggcccgggcc
1021 gtccccggga gcattaagag gacagcctct gtggagtaca agggtgacgg tgggcggcac
1081 cccggtgacg aggctgccaa cggcccagcc tctggggacc ctgtcgacag cagcagcccg
1141 gaggatgcct gcatcgtgcg catcggtggc gaggagggcg gccggccacc tgaagctgac
1201 gaccctgtgc ctgggggcca ggccaggaac ggagctggcg ggggcccaag gagccagacg
1261 cccaaccata atcagcagga cggggattca gggagcctgg gcagcccctc ggcctcccgg
1321 gagtccctgg tgaaggggcg agctgggcca gacaccagtg ccagcgggga gccaggtgcc
1381 aacagcaagc tcctgtacaa ggcctcggtg gtgaagaagg cggctgcacg caggaggcgg
1441 caccccgacg aggccttcga ccatgaggtc tccgccttct tccccgccaa cctggacttc
1501 ctgtgcctgc aggaggtgtt tgacaagcga gcagccacca aattgaaaga gcagctgcac
1561 ggctacttcg agtacatcct gtacgacgtc ggggtctacg gctgccaggg ctgctgcagc
1621 ttcaagtgtc tcaacagcgg cctcctcttt gccagccgct accccatcat ggacgtggcc
1681 tatcactgtt accccaacaa gtgtaacgac gatgccctgg cctctaaggg agctctgttt
1741 ctcaaggtgc aggtgggaag cacacctcag gaccaaagaa tcgtcgggta catcgcctgc
1801 acacacctgc atgccccgca agaggacagc gccatccggt gtgggcagct ggacctgctt
1861 caggactggc tggctgattt ccgaaaatct acctcctcgt ccagcgcagc caaccccgag
1921 gagctggtgg catttgacgt cgtctgtgga gatttcaact ttgataactg ctcctctgac
1981 gacaagctgg agcagcaaca ctccctgttc acccactaca gggacccctg ccgcctgggg
2041 cctggtgagg agaagccgtg ggccatcggt actctgctgg acacgaacgg cctgtacgat
2101 gaggatgtgt gcacccccga caacctgcag aaggtcctgg agagtgagga gggccgcagg
2161 gagtacctgg cgtttcccac cagcaagagc tcgggccaga aggggcggaa ggagctgctg
2221 aagggcaacg gccggcgcat cgactacatg ctgcatgcag aggaggggct gtgcccagac
2281 tggaaggccg aggtggaaga attcagtttt atcacccagc tgtccggcct gacggaccac
2341 ctgccagtag ccatgcgact gatggtgtct tcgggggagg aggaggcata gaccgtccgg
2401 agcagcgggg cctctgccag cccttgcagc tgcagcccat ccctgggcca tgtcccctcc
2461 atcgagtgcc cggtgcttgg gggaggaggg cagggacagg gagggagcca cagtcagtgc
2521 ccgggaacct ggaagctgcg ctgctctgcg cctctgggcc tcactgtgga cagaggagtc
2581 aggcccgccc caggagcctc cagctgccta accagtgcca ttctttcaca acacgatttt
2641 ctacaaatct acagcacaac cgagtttgta acccgtgggt tagtatgagg accgggttcg
2701 tgtactctct gtatctcctc ttaagcttcg tccagggttc tttatttttg tctgctgcca
2761 atgtcgtctc gcatgcctgc accctcgcat gcacgctgcc cgcatgccac gtgccacgct
2821 gtagccacag accccttgct cgggcctcac ccaaggccaa actccaaaca caatcagaac
2881 cagccaaaga agcacttcct gggcacggcc accagctctc ccgcctccag tgtgggccgg
2941 ctcctgcagg gtccgagggc tgcatctcta cca
//