LOCUS AK289547 3540 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78636 complete cds, highly similar to Homo
sapiens cadherin 18, type 2 (CDH18), mRNA.
ACCESSION AK289547
VERSION AK289547.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3540)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3540
/clone="BRACE3030805"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000422344"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 990..3362
/codon_start=1
/note="highly similar to Homo sapiens cadherin 18, type 2
(CDH18), mRNA"
/protein_id="BAF82236.1"
/transl_table=1
/translation="MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRNQTKHIEGE
TEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFI
IDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFT
DGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIR
TALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLY
VPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGMGIFSISTDKETREGILSLKKP
LNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEV
YENAKIGTVVGTVLAQDPDSTNSLVRYFINYNVEDDRFFNIDANTGTIRTTKVLDREE
TPWYNITVTASEIDNPDLLSHVTVGIRVLDVNDNPPELAREYDIIVCENSKPGQVIHT
ISATDKDDFANGPRFNFFLDERLPVNPNFTLKDNEDNTASILTRRRRFSRTVQDVYYL
PIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVL
ILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAA
EELKYRRDIRPEVKLTPRHQTSSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAY
EGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFKKLAELYGEIESERTT"
BASE COUNT 1071 a 793 c 808 g 868 t
ORIGIN
1 tagattgatt atacagcagc agcatgagct gagtctcaga gctgagcgag cgtcagggtg
61 aaaaggaaag agagaaagag agagagagag aaaaaagcgg ggagagagag agagagagga
121 acacaaggtg gggaggaagc cagtgcacgt tccatagcat cactactgtg actgcttgta
181 cccgataatc ttgctctgca gctccctcag tgaacaactt actgaggtgc ctttcttttt
241 acaagaggat gtcagctctg agctccagca agaaataaca gacttcacct tggaatagct
301 catcttactc ctgcatcatt aaagcggatt ttcaaaagaa aacaaaaatc aagtcccctt
361 tccagttcca ctttcttcca gcattgaaca ggaacagttt cacgctccag gactcaacca
421 cagcaatatg taagaagaac acacaccaaa cattcctgaa gtgatttaaa agatggaatc
481 tcgctctgtc tcccaggctg gagtgcagtg gcgcaatctc agctcattgc aacctccacc
541 tcctgggttc acgccattct cctgcctcag cctcctgagt agctgggact acaggcgccc
601 gccaccacgc caggatagac tgaagaggag caagaacaga aacagggagc cagttacaga
661 tctatcccaa gaattctggg gagagatgat ggtgtctgca gcagagtgac agcagtggag
721 attgagagaa aaggttgaaa atggttgctt gtgttcaact actgtgaaga gttggaatca
781 gacaactacg gctttgactt tccaagtggt tcagaatgta aatatgatct gacctttccc
841 tgatggacag ttaaatcatg gacacgctaa acaatttact ttggactgtc cttcctaaag
901 atgctctggc ttctctcttg aatgctcact aagctttcgt agctgacaag gaaaggaagg
961 aaaactgtga actggaaagt tatcttacaa tgaaaattac tagcacatct tgcatctgtc
1021 cagtcctagt gtgtctctgt tttgtgcaga ggtgttatgg aactgctcac cacagctcca
1081 tcaaggtgat gagaaaccaa accaaacaca ttgaaggtga aaccgaagtc catcatcgtc
1141 ccaaaagggg atgggtatgg aatcagttct ttgttttaga agaacatatg ggaccagatc
1201 ctcagtatgt tggaaagctg cactccaatt ctgacaaagg tgatggatct gtcaagtaca
1261 tccttactgg agagggtgct gggactatat ttatcattga cgataccacg ggtgatatcc
1321 actcaacaaa aagcctagac agagagcaga agacccacta tgtgcttcat gctcaagcta
1381 ttgatagacg tacaaacaaa cctcttgagc ctgaatccga gttcatcatc aaagtgcaag
1441 acatcaatga caacgctcca aaattcacag atggaccata cattgttact gtgcctgaaa
1501 tgtcagatat gggtacctct gttctacagg tgacagctac tgatgcagat gaccctacct
1561 atggaaacag cgctcgggtg gtttacagca ttctccaggg acaaccctac ttctccgtcg
1621 accctaaaac aggagttatt agaacggcct tacataacat ggacagagaa gccagagaac
1681 attactccgt agtcattcaa gccaaagaca tggctgggca agttggaggg ctttcaggat
1741 ctacaacagt caacatcacc ttaaccgatg tcaatgacaa cccaccacgc tttcctcaaa
1801 aacactatca gctatatgtt cctgagtcag ctcaagttgg ttcagctgtt gggaaaatca
1861 aggcaaatga tgctgacact ggctcaaatg ctgacatgac ctactccatc ataaatggtg
1921 atggcatggg aatattctca atctccactg acaaagagac cagagaagga atcctttctt
1981 taaagaagcc actgaactat gagaaaaaga agtcatatac cctcaacata gaaggagcaa
2041 atacacatct tgattttcgc ttttctcact tgggtccttt taaagatgct actatgctga
2101 agatcattgt tggggatgta gatgaaccac cactattttc catgccttcc tacctcatgg
2161 aagtctacga aaatgccaag attgggaccg tcgttggtac agttttggca caagatcctg
2221 acagtactaa cagcttagta agatacttca tcaactacaa tgttgaagac gacagatttt
2281 tcaacattga tgccaatact gggaccatta ggactacaaa ggttctcgac agagaagaaa
2341 ctccatggta caacatcaca gtcactgctt cagaaattga taatcctgat ttgctgagcc
2401 atgtcacagt gggtattaga gttctggatg tcaatgacaa tccacccgaa cttgccaggg
2461 aatatgatat tattgtatgt gaaaattcta agcctggcca ggttattcat accatcagtg
2521 ccactgataa agatgatttt gccaatggac caaggtttaa cttctttctt gatgaacgcc
2581 tgcctgtaaa tccaaacttc actctgaagg acaatgaaga taacacagcc agcattctga
2641 caaggcggag gagatttagt cgaactgttc aggatgtgta ttatctgccc attatgatct
2701 ctgatggtgg aatcccctct ctcagcagca gcagcaccct caccatcagg gtttgtgcat
2761 gcgagagaga tgggcgtgtg cggacctgcc atgcagaagc cttcctgtcc tcggctggtt
2821 tgagtacagg agccttaatc gctattcttc tctgtgttct cattctcctg gcaattgtgg
2881 tactttttat caccctgagg cgcagcaaaa aagagccctt gatcatttca gaagaggatg
2941 tacgggagaa cgtggtcacc tatgatgatg aaggaggcgg agaggaagac acagaggcct
3001 ttgacatcac agccttgagg aatccttctg ctgctgagga gctcaagtac cggagggata
3061 tcagacctga agtgaagctc actcccagac accagacatc atccaccctg gaaagcatag
3121 atgttcagga atttattaag caaagactgg cagaagcaga cctagaccct agcgttcccc
3181 cttatgactc tcttcagact tatgcctatg agggtcagag atcagaagct gggtctatca
3241 gctcgctgga ttcagcaacg acacaatcag accaggatta tcactacctt ggagactggg
3301 gacccgagtt taaaaagtta gctgaactct atggagaaat agaatctgaa agaacaactt
3361 agggggtcag ttcttgcaac cttgtggaat ttgcttcctg agtaagtgga tatacaacct
3421 cagcaatgac aaggaagaag tgtggaaaca gtacttggaa ctgaggaagc tggacacagc
3481 tcctgtagaa acaagtgccc ttttcatgat cgaaactggg ttatttaatt ggaagaaagt
//