LOCUS AK289540 2546 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75989 complete cds, highly similar to Homo
sapiens regulatory factor X, 3 (influences HLA class II
expression) (RFX3), transcript variant 2, mRNA.
ACCESSION AK289540
VERSION AK289540.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2546)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2546
/clone="BRACE3025702"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000422337"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 62..2311
/codon_start=1
/note="highly similar to Homo sapiens regulatory factor
X, 3 (influences HLA class II expression) (RFX3),
transcript variant 2, mRNA"
/protein_id="BAF82229.1"
/transl_table=1
/translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQ
TVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQ
VTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTPTTRASPATIE
MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLD
PVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQ
QPMQQKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFG
EVEISSLPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPT
DGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRP
IPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQA
ARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTL
EQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH
LIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDE
ELDDSSEPQAKREKTELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCS
ATGNTYTAV"
BASE COUNT 746 a 600 c 577 g 623 t
ORIGIN
1 accaccacca tctccatcac ccaccaacaa caccacaata atccacagcc aagagaccat
61 catgcagaca tcagagactg ggtcggacac aggctcgaca gtgaccttac aaacatctgt
121 ggctagtcaa gcagcagtgc ctacgcaggt ggtacagcaa gtaccagtac aacaacaggt
181 acagcaggta cagactgtgc agcaggtaca acatgtctat cccgctcagg tgcagtatgt
241 ggaaggaagc gatactgtct ataccaatgg agcaatccga acaacaacgt atccttacac
301 agagacacag atgtacagcc aaaatactgg agggaattac tttgatactc aagggagttc
361 cgcccaggtg actaccgtgg tctcatccca cagtatggtg ggcactggtg ggattcagat
421 gggcgtcaca ggaggacaac tcatcagcag ctctggagga acctatctga tcggcaactc
481 aatggagaat tctggtcact cagtgacacc cacaactcgg gcctccccag cgacaattga
541 aatggcgatt gagacgctgc aaaagtctga cggtctgtcc actcacagaa gctctcttct
601 caacagccat ctccagtggc tgttggacaa ttatgagaca gcagaaggag tgagccttcc
661 cagaagcact ctgtacaacc actaccttcg acactgtcag gaacacaaac tggacccagt
721 caatgctgcc tcttttggaa aattaataag atcaattttt atggggctac gaaccaggag
781 attgggcact agaggaaact ccaaatacca ctactatggg attcgtgtca agccagattc
841 ccctcttaat cgtctgcaag aagacatgca gtatatggct atgagacaac aacccatgca
901 acagaaacaa aggtacaagc ctatgcagaa agtggatggg gttgcagatg gtttcacagg
961 aagtggtcaa cagacaggca catctgttga gcaaactgta attgcccaaa gccaacatca
1021 tcaacagttt ttagatgcat ctcgagcact tccagagttt ggagaagttg aaatctcttc
1081 tctgccagat ggtactacct ttgaggatat caagtcactg cagagtcttt atagagagca
1141 ctgtgaggca atattggacg ttgttgtgaa tcttcaattt agcctgatag aaaaattgtg
1201 gcaaacattc tggcgctatt ctccctctac tccaactgat ggcactacca ttaccgaatc
1261 gagcaatctg agtgaaatag aaagtcgact tccgaaagca aagctgataa ctctgtgcaa
1321 acatgagtct atcctgaaat ggatgtgtaa ctgtgaccat gggatgtacc aggctttggt
1381 ggagattctc atccccgacg tccttagacc tattcctagt gccttgaccc aagccattcg
1441 aaattttgca aaaagccttg aaggttggct ttccaatgcc atgaacaata ttccacagag
1501 aatgatacaa accaaggttg ccgctgtaag tgcctttgcc cagactctgc gaagatacac
1561 gtcgcttaat cacctggccc aggcagctcg tgcagtgctt cagaacactt cccaaatcaa
1621 ccagatgctt agtgacctca accgtgtcga ctttgccaat gtccaggagc aggcttcctg
1681 ggtgtgccag tgtgatgaca acatggttca gagactagaa acagacttca agatgactct
1741 tcagcagcag agcaccctgg agcagtgggc tgcgtggctt gacaatgtga tgatgcaagc
1801 actgaaaccc tatgaaggaa gacccagttt tcctaaagcc gccaggcagt ttctgctaaa
1861 atggtctttc tacagctcaa tggttattcg ggacttaacc ttacgcagtg ctgctagctt
1921 tggctccttc cacctgatcc gtctactcta cgacgaatat atgttttact tagtagaaca
1981 tcgtgttgct caggcaacag gagagactcc tatagcagtc atgggcgagt ttggtgattt
2041 aaatgccgtg tctcctggaa atctggataa agatgaaggc agtgaagtag aaagtgaaat
2101 ggatgaagaa ctggatgact cttcagagcc tcaagccaaa agagagaaaa cagagctgag
2161 ccaggcattt ccagtgggct gcatgcagcc tgttctcgag actggcgtgc aaccaagcct
2221 cctgaatcca attcacagcg agcacattgt cacaagtact cagactatca gacagtgcag
2281 cgctacagga aatacctaca ctgcagtcta aagaatatta aagcgtattt ttccagctta
2341 cattaaccct gttgatattg ggcttaagtt gaaaatttaa taagcctgaa ggtcgactgt
2401 tgtcaaattt tatctgtgct gaacattaac tttttggagt tgtgaaatgg aatgggtgta
2461 tgtattttgc cagatctttt tttttaacgt aaacaaatta tttgcttctt aataatgaat
2521 tttttccctt agtttcaggt gtcaag
//