LOCUS AK289512 3521 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77464 complete cds, highly similar to Homo
sapiens protocadherin 1 (cadherin-like 1) (PCDH1), transcript
variant 1, mRNA.
ACCESSION AK289512
VERSION AK289512.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3521)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3521
/clone="BRACE3007086"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000422309"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 149..3331
/codon_start=1
/note="highly similar to Homo sapiens protocadherin 1
(cadherin-like 1) (PCDH1), transcript variant 1, mRNA"
/protein_id="BAF82201.1"
/transl_table=1
/translation="MDSGAGGRRCPEAALLILGPPRMEPLRHSPGPGGQRLLLPSMLL
ALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVD
GKTGDIFTTETSIDREGLRECQNQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVQD
INDNTPNFASPVITLAIPESTNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFG
LQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDN
APKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDR
NTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGI
GLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGS
DSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQ
SVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQV
KTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMEN
MPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVA
AEDFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRG
KPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFG
VVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGK
KSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSN
SPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYP
SKQVGQPFQLSTPQPLPHPYHGAIWTEVWE"
BASE COUNT 775 a 1082 c 1024 g 640 t
ORIGIN
1 acacactcgg ggagcgggag cgcggcgcgg acgcaaagcc gccgggctgc tgcgcccaga
61 gccagccgga gccggagccg gagcccgaac tgcagctcca gccccagccg tgcggagccg
121 cagcccaggc cggggccggc ggcggctcat ggacagcggg gcgggcggcc ggcgctgccc
181 ggaggcggcc ctcctgattc tggggcctcc caggatggag cccctgaggc acagcccagg
241 ccctgggggg caacggctac tgctgccctc catgctgcta gcactgctgc tcctgctggc
301 tccatcccca ggccacgcca ctcgggtagt gtacaaggtg ccggaggaac agccacccaa
361 caccctcatt gggagcctcg cagccgacta tggttttcca gatgtggggc acctgtacaa
421 gctagaggtg ggtgccccgt accttcgcgt ggatggcaag acaggtgaca ttttcaccac
481 cgagacctcc atcgaccgtg aggggctccg tgaatgccag aaccagctcc ctggtgatcc
541 ctgcatcctg gagtttgagg tatctatcac agacctcgtg cagaatggca gcccccggct
601 gctagagggc cagatagaag tacaagacat caatgacaac acacccaact tcgcctcacc
661 agtcatcact ctggccatcc ctgagagcac caacatcggc tcactcttcc ccatcccgct
721 ggcttcagac cgtgatgctg gtcccaacgg tgtggcatcc tatgagctgc aggctgggcc
781 tgaggcccag gagctatttg ggctgcaggt ggcagaggac caggaggaga agcaaccaca
841 gctcattgtg atgggcaacc tggaccgtga gcgctgggac tcctatgacc tcaccatcaa
901 ggtgcaggat ggcggcagcc ccccacgcgc cagcagtgcc ctgctgcgtg tcaccgtgct
961 tgacaccaat gacaacgccc ccaagtttga gcggccctcc tatgaggccg aactatctga
1021 gaatagcccc ataggccact cggtcatcca ggtgaaggcc aatgactcag accaaggtgc
1081 caatgcagaa atcgaataca cattccacca ggcgcccgaa gttgtgaggc gtcttcttcg
1141 actggacagg aacactggac ttatcactgt tcagggcccg gtggaccgtg aggacctaag
1201 caccctgcgc ttctcagtgc ttgctaagga ccgaggcacc aaccccaaga gtgcccgtgc
1261 ccaggtggtt gtgaccgtga aggacatgaa tgacaatgcc cccaccattg agatccgggg
1321 catagggcta gtgactcatc aagatgggat ggctaacatc tcagaggatg tggcagagga
1381 gacagctgtg gccctggtgc aggtgtctga ccgagatgag ggagagaatg cagctgtcac
1441 ctgtgtggtg gcaggtgatg tgcccttcca gctgcgccag gccagtgaga caggcagtga
1501 cagcaagaag aagtatttcc tgcagactac caccccgcta gactacgaga aggtcaaaga
1561 ctacaccatt gagattgtgg ctgtggactc tggcaacccc ccactctcca gcactaactc
1621 cctcaaggtg caggtggtgg acgtcaatga caacgcacct gtcttcactc agagtgtcac
1681 tgaggtcgcc ttcccggaaa acaacaagcc tggtgaagtg attgctgaga tcactgccag
1741 tgatgctgac tctggctcta atgctgagct ggtttactct ctggagcctg agccggctgc
1801 taagggcctc ttcaccatct cacccgagac tggagagatc caggtgaaga catctctgga
1861 tcgggaacag cgggagagct atgagttgaa ggtggtggca gctgaccggg gcagtcctag
1921 cctccagggc acagccactg tccttgtcaa tgtgctggac tgcaatgaca atgaccccaa
1981 atttatgctg agtggctaca acttctcagt gatggagaac atgccagcac tgagtccagt
2041 gggcatggtg actgtcattg atggagacaa gggggagaat gcccaggtgc agctctcagt
2101 ggagcaggac aacggtgact ttgttatcca gaatggcaca ggcaccatcc tatccagcct
2161 gagctttgat cgagagcaac aaagcaccta caccttccag ctgaaggcag tggatggtgg
2221 cgtcccacct cgctcagctt acgttggtgt caccatcaat gtgctggacg agaatgacaa
2281 cgcaccctat atcactgccc cttctaacac ctctcacaag ctgctgaccc cccagacacg
2341 tcttggtgag acggtcagcc aggtggcagc cgaggacttt gactctggtg tcaatgccga
2401 gctgatctac agcattgcag gtggcaaccc ttatggactc ttccagattg ggtcacattc
2461 aggtgccatc accctggaga aggagattga gcggcgccac catgggctac accgcctggt
2521 ggtgaaggtc agtgaccgcg gcaagccccc acgctatggc acagccttgg tccatcttta
2581 tgtcaatgag actctggcca accgcacgct gctggagacc ctcctgggcc acagcctgga
2641 cacgccgctg gatattgaca ttgctgggga tccagaatat gagcgctcca agcagcgtgg
2701 caacattctc tttggtgtgg tggctggtgt ggtggccgtg gccttgctca tcgccctggc
2761 ggttcttgtg cgctactgca gacagcggga ggccaaaagt ggttaccagg ctggtaagaa
2821 ggagaccaag gacctgtatg cccccaagcc cagtggcaag gcctccaagg gaaacaaaag
2881 caaaggcaag aagagcaagt ccccaaagcc cgtgaagcca gtggaggacg aggatgaggc
2941 cgggctgcag aagtccctca agttcaacct gatgagcgat gcccctgggg acagtccccg
3001 catccacctg cccctcaact acccaccagg cagccctgac ctgggccgcc actatcgctc
3061 taactcccca ctgccttcca tccagctgca gccccagtca ccctcagcct ccaagaagca
3121 ccaggtggta caggacctgc cacctgcaaa cacattcgtg ggcaccgggg acaccacgtc
3181 cacgggctct gagcagtact ccgactacag ctaccgcacc aaccccccca aataccccag
3241 caagcaggta ggccagccct ttcagctcag cacaccccag cccctacccc acccctacca
3301 cggagccatc tggaccgagg tgtgggagtg atggagcagg tttactgtgc ctgcccgtgt
3361 tgggggccag cctgagccag cagtgggagg tggggcctta gtgcctcacc gggcacacgg
3421 attaggctga gtgaagatta agggagggtg tgctctgtgg tctcctccct gccctctccc
3481 cactggggag agacctgtga tttgccaagt ccctggaccc t
//