LOCUS AK223511 2804 bp mRNA linear HUM 26-APR-2005
DEFINITION Homo sapiens mRNA for plakophilin 3 variant, clone: FCC122A01.
ACCESSION AK223511
VERSION AK223511.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2804)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A. and
Yokoyama,S.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Akiko Tanaka
RIKEN Yokohama Institute, Protein Research Group; 1-7-22 Suehiro,
Tsurumi, Yokohama, Kanagawa 230-0045, Japan
URL :http://protein.gsc.riken.jp/
REFERENCE 2
AUTHORS Maruyama,K. and Sugano,S.
TITLE Oligo-capping : a simple method to replace the cap structure of
eucaryotic mRNAs with oligoribonucleotides.
JOURNAL Gene 138, 171-174 (1994)
REFERENCE 3
AUTHORS Suzuki,Y., Yoshitomo,K., Maruyama,K., Suyama,A. and Sugano,S.
TITLE Construction and characterization of a full length-enriched and a
5'-end-enriched cDNA library.
JOURNAL Gene 200, 149-156 (1997)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis, Ministry of Education,
Culture, Sports, Science and Technology of Japan.
FEATURES Location/Qualifiers
source 1..2804
/clone="FCC122A01"
/clone_lib="IMS_COL"
/db_xref="H-InvDB:HIT000331291"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="this clone is also named as hst001000761"
/organism="Homo sapiens"
/tissue_type="colon"
CDS <72..2465
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="plakophilin 3 variant"
/protein_id="BAD97231.1"
/translation="MQDGNFLLSALQPEAGVCSLALPSDLQLDRRGAEGPEAERLRAA
RVQEQVRARLLQLGQQPRHNGAAEPEPEAETARGTSRGQYHTLQAGFSSRSQGLSGDK
TSGFRPIAKPAYSPASWSSRSAVDLSCSRRLSSAHNGGSAFGAAGYGGAQPTPPMPTR
PVSFHERGGVGSRADYDTLSLRSLRLGPGGLDDRYSLVSEQLEPAATSTYRAFAYERQ
ASSSSSRAGGLDWPEATEVSPSRTIRAPAVRTLQRFQSSHRSRGVGGAVPGAVLEPVA
RAPSVRSLSLSLADSGHLPDVHGFNSYGSHRTLQRLSSGFDDIDLPSAVKYLMASDPN
LQVLGAAYIQHKCYSDAAAKKQARSLQAVPRLVKLFNHANQEVQRHATGAMRNLIYDN
ADNKLALVEENGIFELLRTLREQDDELRKNVTGILWNLSSSDHLKDRLARDTLEQLTD
LVLSPLSGAGGPPLIQQNASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVT
SINHALDAGKCEDKSVENAVCVLRNLSYRLYDEMPPSALQRLEGRGRRDLAGAPPGEV
VGCFTPQSRRLRELPLAADALTFAEVSKDPKGLEWLWSPQIVGLYNRLLQRCELNRHT
TEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTADHHQLRSLTGLIRNL
SRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEVLANIIAVLNNLVGASPIAARDLL
YFDGLRKLIFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRDFRAKGYRKEDFLGP"
BASE COUNT 503 a 917 c 958 g 426 t
ORIGIN
1 ggagggacag gacgtgaaga tagttgggtt tggaggcggc cgccaggccc aggcccggtg
61 gacctgccgc catgcaggac ggtaacttcc tgctgtcggc cctgcagcct gaggccggcg
121 tgtgctccct ggcgctgccc tctgacctgc agctggaccg ccggggcgcc gaggggccgg
181 aggccgagcg gctgcgggca gcccgcgtcc aggagcaggt ccgcgcccgc ctcttgcagc
241 tgggacagca gccgcggcac aacggggccg ctgagcccga gcctgaggcc gagactgcca
301 gaggcacatc cagggggcag taccacaccc tgcaggctgg cttcagctct cgctctcagg
361 gcctgagtgg ggacaagacc tcgggcttcc ggcccatcgc caagccggcc tacagcccag
421 cctcctggtc ctcccgctcc gccgtggatc tgagctgcag tcggaggctg agttcagccc
481 acaacggggg cagcgccttt ggggccgctg ggtacggggg tgcccagccc acccctccca
541 tgcccaccag gcccgtgtcc ttccatgagc gcggtggggt tgggagccgg gccgactatg
601 acacactctc cctgcgctcg ctgcggctgg ggcccggggg cctggacgac cgctacagcc
661 tggtgtctga gcagctggag cccgcggcca cctccaccta cagggccttt gcgtacgagc
721 gccaggccag ctccagctcc agccgggcag gggggctgga ctggcccgag gccactgagg
781 tttccccgag ccggaccatc cgtgcccctg ccgtgcggac cctgcagcga ttccagagca
841 gccaccggag ccgcggggta ggcggggcag tgccgggggc cgtcctggag ccagtggctc
901 gagcgccatc tgtgcgcagc ctcagcctca gcctggctga ctcgggccac ctgccggacg
961 tgcatgggtt caacagctac ggtagccacc gaaccctgca gagactcagc agcggttttg
1021 atgacattga cctgccctca gcagtcaagt acctcatggc ttcagacccc aacctgcagg
1081 tgctgggagc ggcctacatc cagcacaagt gctacagcga tgcagccgcc aagaagcagg
1141 cccgcagcct tcaggccgtg cctaggctgg tgaagctctt caaccacgcc aaccaggaag
1201 tgcagcgcca tgccacaggt gccatgcgca acctcatcta cgacaacgct gacaacaagc
1261 tggccctggt ggaggagaac gggatcttcg agctgctgcg gacactgcgg gagcaggatg
1321 atgagcttcg caaaaatgtc acagggatcc tgtggaacct ttcatccagc gaccacctga
1381 aggaccgcct ggccagagac acgctggagc agctcacgga cctggtgttg agccccctgt
1441 cgggggctgg gggtcccccc ctcatccagc agaacgcctc ggaggcggag atcttctaca
1501 acgccaccgg cttcctcagg aacctcagct cagcctctca ggccactcgc cagaagatgc
1561 gggagtgcca cgggctggtg gacgccctgg tcacctctat caaccacgcc ctggacgcgg
1621 gcaaatgcga ggacaagagc gtggagaacg cggtgtgcgt cctgcggaac ctgtcctacc
1681 gcctctacga cgagatgccg ccgtccgcgc tgcagcggct ggagggtcgc ggccgcaggg
1741 acctggcggg ggcgccgccg ggagaggtcg tgggctgctt cacgccgcag agccggcggc
1801 tgcgcgagct gcccctcgcc gccgatgcgc tcaccttcgc ggaggtgtcc aaggacccca
1861 agggcctcga gtggctgtgg agcccccaga tcgtggggct gtacaaccgg ctgctgcagc
1921 gctgcgagct caaccggcac acgacggagg cggccgccgg ggcgctgcag aacatcacgg
1981 caggcgaccg caggtgggcg ggggtgctga gccgcctggc cctggagcag gagcgtattc
2041 tgaaccccct gctagaccgt gtcaggaccg ccgaccacca ccagctgcgc tcactgactg
2101 gcctcatccg aaacctgtct cggaacgcta ggaacaagga cgagatgtcc acgaaggtgg
2161 tgagccacct gatcgagaag ctgccgggca gcgtgggtga gaagtcgccc ccagccgagg
2221 tgctggccaa catcatagct gtgctcaaca acctggtggg ggccagcccc atcgctgccc
2281 gagacctgct gtattttgac ggactccgaa agctcatctt catcaagaag aagcgggaca
2341 gccccgacag tgagaagtcc tcccgggcag catccagcct cctggccaac ctgtggcagt
2401 acaacaagct ccaccgtgac ttccgggcga agggctatcg gaaggaggac ttcctgggcc
2461 cataggtgaa gccttctgga ggagaaggtg acgtggccca gcgtccaagg gacagactca
2521 gctccaggct gcttggcagc ccagcctgga ggagaaggct aatgacggag gggcccctcg
2581 ctggggcccc tgtgtgcatc tttgagggtc ctgggccacc aggaggggca gggtcttata
2641 gctggggact tggcttccgc agggcagggg gtggggcagg gctcaaggct gctctggtgt
2701 atggggtggt gacccagtca cattggcaga ggtgggggtt ggctgtggcc tggcagtatc
2761 ttgggatagc cagcactggg aataaagatg gccatgaaca gtca
//