LOCUS AK223284 3339 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for mutS homolog 2 variant, clone: SYN05289.
ACCESSION AK223284
VERSION AK223284.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3339)
AUTHORS Suzuki,Y., Sugano,S., Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y.,
Tanaka,A. and Yokoyama,S.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Akiko Tanaka
RIKEN Yokohama Institute, Protein Research Group; 1-7-22 Suehiro,
Tsurumi, Yokohama, Kanagawa 230-0045, Japan
URL :http://protein.gsc.riken.jp/
REFERENCE 2
AUTHORS Maruyama,K. and Sugano,S.
TITLE Oligo-capping : a simple method to replace the cap structure of
eucaryotic mRNAs with oligoribonucleotides.
JOURNAL Gene 138, 171-174 (1994)
REFERENCE 3
AUTHORS Suzuki,Y., Yoshitomo,K., Maruyama,K., Suyama,A. and Sugano,S.
TITLE Construction and characterization of a full length-enriched and a
5'-end-enriched cDNA library.
JOURNAL Gene 200, 149-156 (1997)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis, Ministry of Education,
Culture, Sports, Science and Technology of Japan.
Sumio Sugano, Yutaka Suzuki
Laboratory of Functional Genomics Department of Medical Genome
Sciences Graduate School of Frontier Sciences The University of
Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639 Japan
URL: http://www.k.u-tokyo.ac.jp/index.html.en
FEATURES Location/Qualifiers
source 1..3339
/clone="SYN05289"
/clone_lib="SYN"
/db_xref="H-InvDB:HIT000331064"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="this clone is also named as hss001003738"
/organism="Homo sapiens"
/tissue_type="synovial membrane (knee)"
CDS <36..>2669
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="mutS homolog 2 variant"
/protein_id="BAD97004.1"
/translation="MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYT
AHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEV
YKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQ
VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQ
RGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKF
LELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCK
TPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAK
KFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKF
QEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPG
KQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKN
KTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAI
LGKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT
GVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT
KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVN
NLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY
IGESQGYDIMEPAAKKCYLERE"
BASE COUNT 1019 a 652 c 812 g 856 t
ORIGIN
1 atttttcttc aaccaggagg tgaggaggtt tcgacatggc ggtgcagccg aaggagacgc
61 tgcagttgga gagcgcggcc gaggtcggct tcgtgcgctt ctttcagggc atgccggaga
121 agccgaccac cacagtgcgc cttttcgacc ggggcgactt ctatacggcg cacggcgagg
181 acgcgctgct ggccgcccgg gaggtgttca agacccaggg ggtgatcaag tacatggggc
241 cggcaggagc aaagaatctg cagagtgttg tgcttagtaa aatgaatttt gaatcttttg
301 taaaagatct tcttctggtt cgtcagtata gagttgaagt ttataagaat agagctggaa
361 ataaggcatc caaggagaat gattggtatt tggcatataa ggcttctcct ggcaatctct
421 ctcagtttga agacattctc tttggtaaca atgatatgtc agcttccatt ggtgttgtgg
481 gtgttaaaat gtccgcagtt gatggccaga gacaggttgg agttgggtat gtggattcca
541 tacagaggaa actaggactg tgtgaattcc ctgataatga tcagttctcc aatcttgagg
601 ctctcctcat ccagattgga ccaaaggaat gtgttttacc cggaggagag actgctggag
661 acatggggaa actgagacag ataattcaaa gaggaggaat tctgatcaca gaaagaaaaa
721 aagctgactt ttccacaaaa gacatttatc aggacctcaa ccggttgttg aaaggcaaaa
781 agggagagca gatgaatagt gctgtattgc cagaaatgga gaatcaggtt gcagtttcat
841 cactgtctgc ggtaatcaag tttttagaac tcttatcaga tgattccaac tttggacagt
901 ttgaactgac tacttttgac ttcagccagt atatgaaatt ggatattgca gcagtcagag
961 cccttaacct ttttcagggt tctgttgaag ataccactgg ctctcagtct ctggctgcct
1021 tgctgaataa gtgtaaaacc cctcaaggac aaagacttgt taaccagtgg attaagcagc
1081 ctctcatgga taagaacaga atagaggaga gattgaattt agtggaagct tttgtagaag
1141 atgcagaatt gaggcagact ttacaagaag atttacttcg tcgattccca gatcttaacc
1201 gacttgccaa gaagtttcaa agacaagcag caaacttaca agattgttac cgactctatc
1261 agggtataaa tcaactacct aatgttatac aggctctgga aaaacatgaa ggaaaacacc
1321 agaaattatt gttggcagtt tttgtgactc ctcttactga tcttcgttct gacttctcca
1381 agtttcagga aatgatagaa acaactttag atatggatca ggtggaaaac catgaattcc
1441 ttgtaaaacc ttcatttgat cctaatctca gtgaattaag agaaataatg aatgacttgg
1501 aaaagaagat gcagtcaaca ttaataagtg cagccagaga tcttggcttg gaccctggca
1561 aacagattaa actggattcc agtgcacagt ttggatatta ctttcgtgta acctgtaagg
1621 aagaaaaagt ccttcgtaac aataaaaact ttagtactgt agatatccag aagaatggtg
1681 ttaaatttac caacagcaaa ttgacttctt taaatgaaga gtataccaaa aataaaacag
1741 aatatgaaga agcccaggat gccattgtta aagaaattgt caatatttct tcaggctatg
1801 tagaaccaat gcagacactc aatgatgtgt tagctcagct agatgctgtt gtcagctttg
1861 ctcacgtgtc aaatggagca cctgttccat atgtacgacc agccattttg gggaaaggac
1921 aaggaagaat tatattaaaa gcatccaggc atgcttgtgt tgaagttcaa gatgaaattg
1981 catttattcc taatgacgta tactttgaaa aagataaaca gatgttccac atcattactg
2041 gccccaatat gggaggtaaa tcaacatata ttcgacaaac tggggtgata gtactcatgg
2101 cccaaattgg gtgttttgtg ccatgtgagt cagcagaagt gtccattgtg gactgcatct
2161 tagcccgagt aggggctggt gacagtcaat tgaaaggagt ctccacgttc atggctgaaa
2221 tgttggaaac tgcttctatc ctcaggtctg caaccaaaga ttcattaata atcatagatg
2281 aattgggaag aggaacttct acctacgatg gatttgggtt agcatgggct atatcagaat
2341 acattgcaac aaagattggt gctttttgca tgtttgcaac ccattttcat gaacttactg
2401 ccttggccaa tcagatacca actgttaata atctacatgt cacagcactc accactgaag
2461 agaccttaac tatgctttat caggtgaaga aaggtgtctg tgatcaaagt tttgggattc
2521 atgttgcaga gcttgctaat ttccctaagc atgtaataga gtgtgctaaa cagaaagccc
2581 tggaacttga ggagtttcag tatattggag aatcgcaagg atatgatatc atggaaccag
2641 cagcaaagaa gtgctatctg gaaagagaga acctcagagt gacagagcca aaagaccagt
2701 gcctcatttt gctgacatgg aaaaggaaac ttcgtggggg aaagagatct gcttgcagtc
2761 ggccagagag acagaaccgg ggcagtggtg tcgttctgtc acccgggctg gagtgcagtg
2821 ccgcgatctc ggctcactgc aacctctgcc tcctggactc aagcgatcct cctacctcag
2881 cctcccaagt agctgggacc acagactcat gccaccatgc ctggctaagg cctgaaattc
2941 attgcttgtg tacccagaag tgatcagtct ctacagatca tctcacatag ccaagctcac
3001 aaagattgac agtggctcac gcctgtaatc ccagcacttt gggaggatga ggcgggagga
3061 tcgtctgaat tcaggagttc gagaccagcc tggccagcat ggtgaaaccc cgtttctact
3121 aaaaatacaa aaattagcct ggtgtggtgg tgggtgcctg tggtcccagc tactggggag
3181 gctgagacgt gagagtctct tgagcctggg aggcggaggt ttcggtgagc tgggatcgcg
3241 ccactgcact tcagcctggg tgacggagcg ggaccctgtc tcaaaaaaaa aaaaaaaaaa
3301 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//