LOCUS AK223266 3114 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for vascular cell adhesion molecule 1 isoform a
precursor variant, clone: SYN01792.
ACCESSION AK223266
VERSION AK223266.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3114)
AUTHORS Suzuki,Y., Sugano,S., Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y.,
Tanaka,A. and Yokoyama,S.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Akiko Tanaka
RIKEN Yokohama Institute, Protein Research Group; 1-7-22 Suehiro,
Tsurumi, Yokohama, Kanagawa 230-0045, Japan
URL :http://protein.gsc.riken.jp/
REFERENCE 2
AUTHORS Maruyama,K. and Sugano,S.
TITLE Oligo-capping : a simple method to replace the cap structure of
eucaryotic mRNAs with oligoribonucleotides.
JOURNAL Gene 138, 171-174 (1994)
REFERENCE 3
AUTHORS Suzuki,Y., Yoshitomo,K., Maruyama,K., Suyama,A. and Sugano,S.
TITLE Construction and characterization of a full length-enriched and a
5'-end-enriched cDNA library.
JOURNAL Gene 200, 149-156 (1997)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis, Ministry of Education,
Culture, Sports, Science and Technology of Japan.
Sumio Sugano, Yutaka Suzuki
Laboratory of Functional Genomics Department of Medical Genome
Sciences Graduate School of Frontier Sciences The University of
Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639 Japan
URL: http://www.k.u-tokyo.ac.jp/index.html.en
FEATURES Location/Qualifiers
source 1..3114
/clone="SYN01792"
/clone_lib="SYN"
/db_xref="H-InvDB:HIT000331046"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="this clone is also named as hss001003668"
/organism="Homo sapiens"
/tissue_type="synovial membrane (knee)"
CDS <121..2340
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="vascular cell adhesion molecule 1 isoform a
precursor variant"
/protein_id="BAD96986.1"
/translation="MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVS
LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR
KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK
SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ
VYISPKNTVISVNPSTKLQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATL
TLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQEKPFTVEISPGPRIAAQTGDSVMLT
CSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFENEHSYLCTVTCGHKKL
EKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETILENI
EFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYVN
VAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTL
ISTKMEDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCT
CGNVPETWIILKKKAETGDTVLKSIDGAYTIRKAQLKDAGVYECESKNKVGSQLRSLT
LDVQGRENNKDYFSPELLVLYFASSLIIPAIGMIIYFARKANMKGSYSLVEAQKSKV"
BASE COUNT 954 a 598 c 690 g 872 t
ORIGIN
1 agcggtatct gcatcgggcc tcactggctt caggagctga ataccctccc aggcacacac
61 aggtgggaca caaataaggg ttttggaacc actattttct catcacgaca gcaacttaaa
121 atgcctggga agatggtcgt gatccttgga gcctcaaata tactttggat aatgtttgca
181 gcttctcaag cttttaaaat cgagaccacc ccagaatcta gatatcttgc tcagattggt
241 gactccgtct cattgacttg cagcaccaca ggctgtgagt ccccattttt ctcttggaga
301 acccagatag atagtccact gaatgggaag gtgacgaatg aggggaccac atctacgctg
361 acaatgaatc ctgttagttt tgggaacgaa cactcttacc tgtgcacagc aacttgtgaa
421 tctaggaaat tggaaaaagg aatccaggtg gagatctact cttttcctaa ggatccagag
481 attcatttga gtggccctct ggaggctggg aagccgatca cagtcaagtg ttcagttgct
541 gatgtatacc catttgacag gctggagata gacttactga aaggagatca tctcatgaag
601 agtcaggaat ttctggagga tgcagacagg aagtccctgg aaaccaagag tttggaagta
661 acctttactc ctgtcattga ggatattgga aaagttcttg tttgccgagc taaattacac
721 attgatgaaa tggattctgt gcccacagta aggcaggctg taaaagaatt gcaagtctac
781 atatcaccca agaatacagt tatttctgtg aatccatcca caaagctgca agaaggtggc
841 tctgtgacca tgacctgttc cagcgagggt ctaccagctc cagagatttt ctggagtaag
901 aaattagata atgggaatct acagcacctt tctggaaatg caactctcac cttaattgct
961 atgaggatgg aagattctgg aatttatgtg tgtgaaggag ttaatttgat tgggaaaaac
1021 agaaaagagg tggaattaat tgttcaagag aaaccattta ctgttgagat ctcccctgga
1081 ccccggattg ctgctcagac tggagactca gtcatgttga catgtagtgt catgggctgt
1141 gaatccccat ctttctcctg gagaacccag atagacagcc ctctgagcgg gaaggtgagg
1201 agtgagggga ccaattccac gctgaccctg agccctgtga gttttgagaa cgaacactct
1261 tatctgtgca cagtgacttg tggacataag aaactggaaa agggaatcca ggtggagctc
1321 tactcattcc ctagagatcc agaaatcgag atgagtggtg gcctcgtgaa tgggagctct
1381 gtcactgtaa gctgcaaggt tcctagcgtg tacccccttg accggctgga gattgaatta
1441 cttaaggggg agactattct ggagaatata gagtttttgg aggatacgga tatgaaatct
1501 ctagagaaca aaagtttgga aatgaccttc atccctacca ttgaagatac tggaaaagct
1561 cttgtttgtc aggctaagtt acatattgat gacatggaat tcgaacccaa acaaaggcag
1621 agtacgcaaa cactttatgt caatgttgcc cccagagata caaccgtctt ggtcagccct
1681 tcctccatcc tggaggaagg cagttctgtg aatatgacat gcttgagcca gggctttcct
1741 gctccgaaaa tcctgtggag caggcagctc cctaacgggg agctacagcc tctttctgag
1801 aatgcaactc tcaccttaat ttctacaaaa atggaagatt ctggggttta tttatgtgaa
1861 ggaattaacc aggctggaag aagcagaaag gaagtggaat taattatcca agttactcca
1921 aaagacataa aacttacagc ttttccttct gagagtgtca aagaaggaga cactgtcatc
1981 atctcttgta catgtggaaa tgttccagaa acatggataa tcctgaagaa aaaagcggag
2041 acaggagaca cagtactaaa atctatagat ggcgcctata ccatccgaaa ggcccagttg
2101 aaggatgcgg gagtatatga atgtgaatct aaaaacaaag ttggctcaca attaagaagt
2161 ttaacacttg atgttcaagg aagagaaaac aacaaagact atttttctcc tgagcttctc
2221 gtgctctatt ttgcatcctc cttaataata cctgccattg gaatgataat ttactttgca
2281 agaaaagcca acatgaaggg gtcatatagt cttgtagaag cacagaaatc aaaagtgtag
2341 ctaatgcttg atatgttcaa ctggagacac tatttatctg tgcaaatcct tgatactgct
2401 catcattcct tgagaaaaac aatgagctga gaggcagact tccctgaatg tattgaactt
2461 ggaaagaaat gcccatctat gtcccttgct gtgagcaaga agtcaaagta aaacttgctg
2521 cctgaagaac agtaactgcc atcaagatga gagaactgga ggagttcctt gatctgtata
2581 tacaataaca taatttgtac atatgtaaaa taaaattatg ccatagcaag attgcttaaa
2641 atagcaacac tctatattta gattgttaaa ataactagtg ttgcttggac tattataatt
2701 taatgcatgt taggaaaatt tcacattaat atttgctgac agctgacctt tgtcatcttt
2761 cttctatttt attccctttc acaaaatttt attcctatat agtttattga caataatttc
2821 aggttttgta aagatgccgg gttttatatt tttatagaca cataataagc aaagggagca
2881 ctgggttgac tttcaggtac taaatacctc aacctatggt ataatggttg actgggtttc
2941 tctgtatagt actggcatgg tacggagatg tttcacgaag tttgttcatc agactcctgt
3001 gcaactttcc caatgtggcc taaaaatgca acttcttttt attttctttt gtaaatgttt
3061 aggttttttt gtatagtaaa gtgataattt ctggaattaa aaaaaaaaaa aaaa
//