LOCUS AK222844 3436 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for xeroderma pigmentosum, complementation group
C variant, clone: HEP08569.
ACCESSION AK222844
VERSION AK222844.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3436)
AUTHORS Suzuki,Y., Sugano,S., Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y.,
Tanaka,A. and Yokoyama,S.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Akiko Tanaka
RIKEN Yokohama Institute, Protein Research Group; 1-7-22 Suehiro,
Tsurumi, Yokohama, Kanagawa 230-0045, Japan
URL :http://protein.gsc.riken.jp/
REFERENCE 2
AUTHORS Maruyama,K. and Sugano,S.
TITLE Oligo-capping : a simple method to replace the cap structure of
eucaryotic mRNAs with oligoribonucleotides.
JOURNAL Gene 138, 171-174 (1994)
REFERENCE 3
AUTHORS Suzuki,Y., Yoshitomo,K., Maruyama,K., Suyama,A. and Sugano,S.
TITLE Construction and characterization of a full length-enriched and a
5'-end-enriched cDNA library.
JOURNAL Gene 200, 149-156 (1997)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis, Ministry of Education,
Culture, Sports, Science and Technology of Japan.
Sumio Sugano, Yutaka Suzuki
Laboratory of Functional Genomics Department of Medical Genome
Sciences Graduate School of Frontier Sciences The University of
Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639 Japan
URL: http://www.k.u-tokyo.ac.jp/index.html.en
FEATURES Location/Qualifiers
source 1..3436
/cell_line="HepG2"
/clone="HEP08569"
/clone_lib="HEP"
/db_xref="H-InvDB:HIT000330624"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="this clone is also named as hss001001601"
/organism="Homo sapiens"
/tissue_type="liver"
CDS <1..2620
/codon_start=2
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="xeroderma pigmentosum, complementation group C
variant"
/protein_id="BAD96564.1"
/translation="GPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHL
KRGATMNEDSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETP
EQAKTRERSEKIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPD
LHAIGLSIIPARFTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERR
FAIYSARDDEELVHIFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPG
GSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEED
EGPGDKQEKATQRRPHGRERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDS
EPGPPKQRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGE
KAEKRSIAGIDQWLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDG
WVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPL
PTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLK
KARVVRLGEVPYKMVKGFSNRARKARLAEPQLREENDLGLFGYWQTEEYQPPVAVDGK
VPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPVT
DGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYG
PKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARILAASWPQNREDEEKQKLKGGPKKTK
REKKAAASHLFPFEQL"
BASE COUNT 979 a 808 c 950 g 699 t
ORIGIN
1 tggtccagca aaaaagaaag tggccaaggt gactgttaaa tctgaaaacc tcaaggttat
61 aaaggatgaa gccctcagcg atggggatga cctcagggac tttccaagtg acctcaagaa
121 ggcacaccat ctgaagagag gggctaccat gaatgaagac agcaatgaag aagaggaaga
181 aagtgaaaat gattgggaag aggttgaaga acttagtgag cctgtgctgg gtgacgtgag
241 agaaagtaca gccttctctc gatctcttct gcctgtgaag ccagtggaga tagagattga
301 aacgccagag caggcgaaga caagagaaag aagtgaaaag ataaaactgg agtttgagac
361 atatcttcgg agggcgatga aacgtttcaa taaaggggtc catgaggaca cacacaaggt
421 tcaccttctc tgcctgctag caaatggctt ctatcgaaat aacatctgca gccagccaga
481 tctgcatgct attggcctgt ccatcatccc agcccgcttt accagagtgc tgcctcgaga
541 tgtggacacc tactacctct caaacctggt gaagtggttc attggaacat ttacagttaa
601 tgcagaactt tcagccagtg aacaagataa cctgcagact acattggaaa ggagatttgc
661 tatttactct gctcgagatg atgaggaatt ggtccatata ttcttactga ttctccgggc
721 tctgcagctc ttgacccggc tggtattgtc tctacagcca attcctctga agtcagcaac
781 agcaaaggga aagaaacctt ccaaggaaag attgactgcg gatccaggag gctcctcaga
841 aacttccagc caagttctag aaaaccacac caaaccaaag accagcaaag gaaccaaaca
901 agaggaaacc tttgctaagg gcacctgcag gccaagtgcc aaagggaaga ggaacaaggg
961 aggcagaaag aaacggagca agccctcctc cagcgaggaa gatgagggcc caggagacaa
1021 gcaggagaag gcaacccagc gacgtccgca tggccgggag cggcgggtgg cctccagggt
1081 gtcttataaa gaggagagtg ggagtgatga ggctggcagc ggctctgatt ttgagctctc
1141 cagtggagaa gcctctgatc cctctgatga ggattccgaa cctggccctc caaagcagag
1201 gaaagccccc gctcctcaga ggacaaaggc tgggtccaag agtgcctcca ggacccatcg
1261 tgggagccat cgtaaggacc caagcttgcc agcggcatcc tcaagctctt caagcagtaa
1321 aagaggcaag aaaatgtgca gcgatggtga gaaggcagaa aaaagaagca tagctggtat
1381 agaccagtgg ctagaggtgt tctgtgagca ggaggaaaag tgggtatgtg tagactgtgt
1441 gcacggtgtg gtgggccagc ctctgacctg ttacaagtac gccaccaagc ccatgaccta
1501 tgtggtgggc attgacagtg acggctgggt ccgagatgtc acacagaggt acgacccagt
1561 ctggatgaca gtgacccgca agtgccgggt tgatgctgag tggtgggccg agaccttgag
1621 accataccag agcccattta tggacaggga gaagaaagaa gacttggagt ttcaggcaaa
1681 acacatggac cagcctttgc ccactgccat tggcttatat aagaaccacc ctctgtatgc
1741 cctgaagcgg catctcctga aatatgaggc catctatccc gagacagctg ccatccttgg
1801 gtattgtcgt ggagaagcgg tctactccag ggattgtgtg cacactctgc attccaggga
1861 cacgtggctg aagaaagcaa gagtggtgag gcttggagaa gtaccctaca agatggtgaa
1921 aggcttttct aaccgtgctc ggaaagcccg acttgctgag ccccagctgc gggaagaaaa
1981 tgacctgggc ctgtttggct actggcagac agaggagtat cagcccccag tggccgtgga
2041 cgggaaggtg ccccggaacg agtttgggaa tgtgtacctc ttcctgccca gcatgatgcc
2101 tattggctgt gtccagctga acctgcccaa tctacaccgc gtggcccgca agctggacat
2161 cgactgtgtc caggccatca ctggctttga tttccatggc ggctactccc atcccgtgac
2221 tgatggatac atcgtctgcg aggaattcaa agacgtgctc ctgactgcct gggaaaatga
2281 gcaggcagtc attgaaagga aggagaagga gaaaaaggag aagcgggctc tagggaactg
2341 gaagttgctg gccaaaggtc tgctcatcag ggagaggctg aagcgtcgct acgggcccaa
2401 gagtgaggca gcagctcccc acacagatgc aggaggtgga ctctcttctg atgaagagga
2461 ggggaccagc tctcaagcag aagcggccag gatactggct gcctcctggc ctcaaaaccg
2521 agaagatgaa gaaaagcaga agctgaaggg tgggcccaag aagaccaaaa gggaaaagaa
2581 agcagcagct tcccacctgt tcccatttga gcagctgtga gctgagcgcc cactagaggg
2641 gcacccacca gttgctgctg ccccactaca ggccccacac ctgccctggg catgcccagc
2701 ccctggtggt gggggcttct ctgctgagaa ggcaaactga ggcagcatgc acggaggcgg
2761 ggtcagggga gacgaggcca agctgaggag gtgctgcagg tcccgtctgg ctccagccct
2821 tgtcagattc acccagggtg aagccttcaa agctttttgc taccaaagcc cactcaccct
2881 ttgagctaca gaacactttg ctaggagata ctcttctgcc tcctagacct gttctttcca
2941 tctttagaaa catcagtttt tgtatggaag ccaccgggag atttctggat ggtggtgcat
3001 ccgtgaatgc gctgatcgtt tcttccagtt agagtcttca tctgtccgac aagttcactc
3061 gcctcggttg cggacctagg accatttctc tgcaggccac ttaccttccc ctgagtcagg
3121 cttactaatg ctgccctcac tgcctctttg cagtagggga gagagcagag aagtacaggt
3181 catctgctgg gatctagttt tccaagtaac attttgtggt gacagaagcc taaaaaaagc
3241 taaaatcagg aaagaaaagg aaaaatacga attgaaaatt aaggaaatgt tagtaaaata
3301 gatcagtgtt aaactagatt gtattcatta ctagataaaa tgtataaagc tctctgtact
3361 aaggagaaat gacttttata acattttgag aaaataataa agcatttatc taaaaaaaaa
3421 aaaaaaaaaa aaaaaa
//