LOCUS       AK186879                 436 bp    mRNA    linear   HTC 19-SEP-2008
DEFINITION  Mus musculus cDNA, clone:Y0G0139B13, strand:minus,
            reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000042289, based
            on BLAT search.
ACCESSION   AK186879
VERSION     AK186879.1
KEYWORDS    HTC; ASSETS.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Harbers,M., Hayatsu,N.,
            Hori,F., Imotani,K., Kawai,J., Kondo,S., Murata,M., Nakamura,M.,
            Nomura,K., Ohno,M., Sasaki,D., Shiraki,T., Waki,K., Watahiki,A.
            and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat. Methods 1, 233-239 (2004)
COMMENT     Alternative Splicing Libraries (ASLs) are prepared by:
            Preparating of single-stranded DNA using a RNA template
            from full length cDNA libraries, hybridizating of
            single-stranded DNAs, removing of remaining single-stranded
            DNA, digesting of regions comprising double-stranded DNA
            by a set of 4 bp-cutters, capturing of DNA hybrids with loop
            structures (alternative spliced exon), ligating of Y-shaped
            primers to isolated DNA hybrids with loop structures, PCR
            amplification of ligation products and their cloning into
            pFLCI vector. (Reference)
FEATURES             Location/Qualifiers
     source          1..436
                     /cell_line="mixture of B16-F10Y and melan-c"
                     /cell_type="mixture of melanoma cell and melanocyte cell"
                     /clone="Y0G0139B13"
                     /clone_lib="Alternative Splicing Library L2"
                     /db_xref="taxon:10090"
                     /mol_type="mRNA"
                     /note="strand:minus,
                     reference:ENSEMBL:Mouse-Transcript-
                     ENST:ENSMUST00000042289, based on BLAT search"
                     /organism="Mus musculus"
BASE COUNT           91 a          116 c          120 g          109 t
ORIGIN      
        1 atccatgcct ttgtcacctg accctcggtg tccacttggg actcctggat cggcctcggg
       61 ttgggcccag agtccttgag gatgagtcct ccccagactc taccagttcc ctgtcgtttt
      121 gtgtcagaga aaagggggtt atgggacctg aacactgtac ccgttctgag gcgagggcaa
      181 gggcagccag ctgagcttcc cagaccccat cactctctcc tgtcccttgt gtgaggagca
      241 gtgtcccctt gctgcaggga gagtgacagg tggccttaac tcctgtgaag tgtttttcca
      301 tctgagcaga tgtcatggac cacgagcatg aagaagtcat ctctattgga tcagaaaata
      361 ccttagcttt gctgagccgt aactgtgcac tgaaggtgca gctgttactt gaatcagtca
      421 tgaccaagag aggccg
//