LOCUS AK170559 3254 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630107N20
product:hypothetical protein, full insert sequence.
ACCESSION AK170559
VERSION AK170559.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3254)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630107N20
FEATURES Location/Qualifiers
source 1..3254
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630107N20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630107N20"
/db_xref="MGI:3554093"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 73..2394
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAE41880.1"
/transl_table=1
/translation="MTSSPFLDPWPSKAVFVRERLGLGERPNDSYCYNSAKNSTVLQG
VTFGGIPTVLLLDVSCFLFLILVFSIIRRRFWDYGRIALVSEAGSEARFQRLSSSSSG
QQDFENELGCCPWLTAIFRLHDDQILEWCGEDAIHYLSFQRHIIFLLVVISFLSLCVI
LPVNLSGDLLGKDPYSFGRTTIANLQTDNDLLWLHTVFSVIYLFLTVGFMWHHTRSIR
YKEESLVRQTLFITGLPREARKETVESHFRDAYPTCEVVDVQLCYSVAKLIYLCKERK
KTEKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSLLERI
TAEESRVQDQPLGMAFVTFREKSMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVS
KWTVTFASYPEDICWKNLSIQGVRWWLQWLGINFSLFVVLFFLTTPSIIMSTMDKFNV
TKPIHALNNPVISQFFPTLLLWSFSALLPSIVYYSTLLESHWTRSGENRIMVSKVYIF
LIFMVLILPSLGLTSLDFFFRWLFDKTSSETSIRLECVFLPDQGAFFVNYVIASAFIG
SGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFEYEFGAMYAWMLCVFTVIMAYS
ITCPIIVPFGLIYILLKHMVDRHNLYFAYLPAKREKRIHFAAVNQALAAPILCLFWLF
FFSFLRLGLTAPATLFTFLVVLLTILACLLYTCFGCFKHLSPWNYKTEESASDKGSEA
EAHVPPPFTPYVPRILNGLASERTALSPQQQQT"
regulatory 3228..3233
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3254
/note="putative"
BASE COUNT 661 a 928 c 860 g 805 t
ORIGIN
1 gctcgccagg tacggactga ccactccccc gggcgcgcgc gccgcgccgc cgccgcaggg
61 agagaaggca caatgaccag ctccccgttc ctggatccct ggccgtccaa ggctgtgttt
121 gtccgtgagc gcctgggtct tggcgaacgt cccaatgact cctattgcta caactcagcc
181 aaaaacagca ctgtgctcca aggggtcacc tttggaggca tccccactgt cctgctctta
241 gatgtcagtt gctttctgtt tctaatcctg gtgttttcca tcataaggag aagattctgg
301 gattatggcc gcatagccct ggtatcagaa gcaggcagtg aggccaggtt ccagagactg
361 tcctcttcct cctcagggca acaagacttt gaaaacgagc tgggatgctg tccttggctg
421 acggccatct tccgcctgca tgacgaccag atcctggagt ggtgcggaga ggacgccatc
481 cactacctgt cttttcagag gcacatcatc ttcctgctgg tggtgatcag cttcttgtcc
541 ctgtgtgtca tcttgcctgt caacctctcg ggagacttgc tgggtaaaga cccttacagc
601 tttgggagga caacgatagc taacctgcag actgacaatg acctcctctg gctgcacact
661 gtcttcagcg tcatctacct cttcctcacg gtgggcttca tgtggcatca cacacggtcc
721 atcagataca aagaggagag tctggtgaga caaaccttgt tcatcacagg actccccaga
781 gaagccagaa aggagactgt ggagagccac ttccgagatg cgtatcccac gtgtgaggtg
841 gtggatgtcc agctgtgcta cagcgtggct aagctgatct acctgtgcaa agagagaaag
901 aagaccgaga agagccttac ctattacaca aacctgcagg cgaagacagg ccgacggacc
961 ctcatcaacc ccaagccttg tggccagttc tgctgctgtg aagttcaggg ttgtgagcgg
1021 gaagatgcta tttcttacta cactcgaatg aatgacagcc tgctggagag gatcacagcc
1081 gaagagagcc gggtccagga ccagcccctg ggaatggcct ttgtcacctt ccgtgagaag
1141 tccatggcta cctacatact gaaagacttc aatgcctgca agtgccaggg ccttcggtgc
1201 aaaggggagc cccagccatc ctcctatagc agagagctct gtgtctccaa gtggacggtc
1261 acttttgcct cctatcctga ggacatctgc tggaagaacc tctccatcca gggcgttcgc
1321 tggtggctcc agtggctggg tatcaacttc tctctgtttg tggtgctgtt tttcctgacc
1381 acgccctcca tcattatgtc taccatggac aagttcaatg ttaccaaacc catccacgca
1441 ctgaataacc ccgtcatcag ccagttcttc cccacactcc tgctgtggtc cttctctgcg
1501 ctgcttccgt ccattgtcta ctactccacg ctgctggagt cccactggac aaggtcaggg
1561 gaaaaccgga tcatggtgtc gaaggtctac atatttttga tcttcatggt gctgatcctg
1621 ccctccctcg gtctcaccag cttggatttc ttcttccggt ggctctttga caaaacttcc
1681 tcggaaacct caatcaggct agagtgtgtc ttcctgccag accagggtgc cttctttgtg
1741 aactacgtca tcgcctcagc cttcatcggc agtggcatgg agctgttgcg cctgcccggc
1801 ctcatcctct ataccttccg catgatcatg gccaagacgg ccgctgaccg caggaatgtt
1861 aagcagaacc aggcttttga atacgagttt ggagccatgt atgcgtggat gctgtgtgtc
1921 ttcaccgtca tcatggctta cagcatcacc tgccccatta tcgtgccctt tggcctcatc
1981 tacatcctgc ttaagcacat ggtggaccgg cataacctct acttcgctta cctcccggct
2041 aaacgggaga agaggatcca cttcgccgcc gtgaaccagg ccctggccgc ccccatcctc
2101 tgcctcttct ggctcttctt tttctccttc ctccgtctgg gtctgacggc cccggccacg
2161 ctcttcacct tcctggttgt tctgctcacc atcctggcct gcctgctgta cacctgcttt
2221 ggatgcttca agcacctcag cccatggaac tacaagacag aagaatcagc tagtgacaaa
2281 ggaagcgaag ccgaggccca cgtgcccccg ccattcacac cctatgtgcc tcggattctg
2341 aacggtttgg cctcagagag gacagcgtta tccccacagc agcagcagac ctaaggtgcc
2401 atccgtaaca tcagtgggac tcttcctggg cagcccgtgg ctcaagatcc tagtggcact
2461 gcggcttatg cctaccagga atcctgagag tggacaagct ggtctggcag gctgggagca
2521 tctaggaata ccgagggaca caaggggcta gagccccaga caggctcttg agggttttgc
2581 tgcttaaaac ccccgtattg tgagaagagg aaaccagcgg gtcgtggggc tctgggtaac
2641 cgggctgagg gtatccatcc ggtggggctg ctgtccctgg gagccatctg taaggtttct
2701 tttctggtcc cagtgtgggg aacatttaca gctccctctt gtggtcatct gaggatatgc
2761 acttttattc ccccatacac tgctcaggat gctctctgta gtgagcatgg tgtatgtccc
2821 tagtggtttg tggccaagat catgtgttgg gcttttgcct ttagggagat catatttggg
2881 gacttctggt tgatggggag atgcgtccag gaaagactta gtccctctga gccctggaac
2941 actgcttagc cttctgcaag ctgatgaata gcgcatcagt tgggtctgag atggaggcca
3001 tgtggggccc tacagtactg tcctgcctgc agtccctttt cagggatcca tggattagct
3061 gtagggaccg gggaatacct tgttcttgtt gatggcagca gggcagcagg ctcatgccca
3121 ctggtttgta gctgcctcct gctgtgtttc cgggtttttg tatcatgttg cctgaatctg
3181 ggctgtgact gggtaacccc acagcaggtg gggacatgag aaccattaat aaagtaccca
3241 ctgggctggt ggtg
//