LOCUS AK169608 1031 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430002C10 product:H3 histone,
family 3A, full insert sequence.
ACCESSION AK169608
VERSION AK169608.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1031)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430002C10
FEATURES Location/Qualifiers
source 1..1031
/cell_type="thymic cells"
/clone="E430002C10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430002C10"
/db_xref="MGI:3551077"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
misc_feature 1..1031
/note="H3 histone, family 3A (MGD|MGI:1097686
GB|BC002268, evidence: BLASTN, 99%, match=1021)"
/note="putative"
BASE COUNT 283 a 229 c 222 g 297 t
ORIGIN
1 ggtgttcgca gccttcgccg cgccgctgcc gctctccaac gccagcgccg cctctcgctt
61 gccgagctcc agccgaagga gaaggggggt aagtaaggag gtgtccttac catggctcgt
121 acaaagcaga ctgcccgcaa atccaccggt ggtaaagcac ccaggaaaca actggctaca
181 aaagccgctc gcaagagtgc gccctctact ggaggggtga agaaacctca tcgttacagg
241 cctggtactg tggccctccg tgaaatcaga cgctatcaga agtccactga acttctgatc
301 cgcaagctcc cctttcagcg tctggtgcga gaaattgctc aggacttcaa aacagatctg
361 cgcttccaga gtgcagctat tggtgctttg caggaggcaa gtgaggccta tctggttggc
421 ctttttgaag ataccaatct gtgtgctatc catgcctaac gtgtaacaat tatgccaaaa
481 gatatccagc tagcacgccg catacgcgga gaacgtgctt aagagtccac tatgagggga
541 aacatttcat tctcaaaaaa attttttttc ctcttcttcc tgttatcagt agttctgaat
601 gttagatatt ttttccatgg ggtcaaaggt acctaagtat atgattgcga gtggaaacat
661 aggggacaga atcaggtatt ggcgtttctc cacgttcatt tgtgtgtgaa tttttaatat
721 aaatgcaaga tggaaagcat taatgcaagc aaaatgtttc agtgaacaca tttcaacagt
781 tcaactttat aacaattata aataaacctg ttaaaatttt ctggacaatg ccagcatttg
841 gattttttta aaataagtaa atttcttatt gacggcaact aaatggtgtt tgtagcattt
901 ttatcacaca gtagattcca tccattcact atacttttct aactgagttg tcctacatac
961 aagtacatgt ttttaatgtt gtcagtcttc tgtgctgttc ctgtaagttt gctattaaaa
1021 tacattaaac t
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