LOCUS AK169505 3570 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630054N04 product:acyl-Coenzyme A binding
domain containing 3, full insert sequence.
ACCESSION AK169505
VERSION AK169505.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3570)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630054N04
FEATURES Location/Qualifiers
source 1..3570
/clone="A630054N04"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630054N04"
/db_xref="MGI:3543487"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
misc_feature 1..3570
/note="acyl-Coenzyme A binding domain containing 3
(MGD|MGI:2181074 GB|NM_133225, evidence: BLASTN, 100%,
match=260)"
/note="putative"
BASE COUNT 956 a 678 c 752 g 1184 t
ORIGIN
1 ttggaggcaa aagacttaaa gggccagttg acacctgcag agcaagtgtg ggttgaggaa
61 atagtgccac tccagaaagg acagtggaga gggcatgggg cctggcatgt gtgtctggga
121 aatggaaaac aggaggtagt ttgatgaatc gatgagaagg ttgaatacag gtcctagaag
181 catttaatga agttgtatat agtttagcct ttttgttaga tgaagaacca ggaaggtttt
241 tcaaaagagg aaagaagttg ctcttaattc tactttagca agattgagct aggctttcct
301 agccttttat gttaggtcct aaagaattcc actttatact tctgggacgg agttaacttg
361 tttttgttga gttattcagg gtttagtttt ttccttttca aaaactcact tgctgttaca
421 tttgtctggt agattggttg cattgattta tgatctcaaa ctaatggttg tcagtggtta
481 cagagcagat gtttactgga tgtcaggtga aagctgcgtg catactattt tacctaatcc
541 ttccttgagg gttctatgct atctatgtct cttagtggag ggacctggct taggccattc
601 acttcatgta cgaggaaagg ctgatctctc tctggtttta ggcagttcta cccctgcaaa
661 aggtgacagt agataggacc ctgctttctg gtaatatact gagggaaaga attcagaagt
721 actatcaagt tactttatta cttgaatgtt ttcggcatga aagtattaag aactagtgca
781 atgatctgag ttggttctgt ttgatttaga tttattttat ttgcatgaat gtatgtgtac
841 cacttattgc ctgctgcctg tagaggtcag aagaaggcat tggatcccct ggaaatgaag
901 ttacagatgg ttttgagcca ccatgtgggt tctgggaatg gaacccagtt cttctgacaa
961 aagagccaat acctttaact gctgagccag ttctccagcc ctccttatca agtcatttgt
1021 ctagcttttt aaaatctgat ggtatgggtg gcttcaactg cagtgtcttt aattagtgaa
1081 gttgaatacc catgtagatg tttattggca acttctgtgt cttttgcctt tttctccctg
1141 ttcatatagt tcaattcatg tttttcccca cctttgagac agttttctct atgtagcctt
1201 ggcagttctc aaaactcaat gctcatagac ctctctgcct cctgagtgct gggtctaggg
1261 gcttgtgcca gcactgccta gcttttttca tccatactat gtgtgcatgg atgaaacttg
1321 tacatagctt gtactcagtt cttttataat tttgtatttt ttggtgaggg caatgtcatg
1381 gcacgggatc agggacagct tgagtcagtt ctttccttcc actatgtgga ttaggaccca
1441 acttgaggtt gtcagattag ctgctgagcc atcttgtcag ctgggttttt ttaattttgt
1501 agtccatttt tactagaatc aattaaaaac tattaagact gttataatgg gggggggtat
1561 ttaaagatta tcattttacc agggctcagt tttatactgt tttctaacag tagttaggta
1621 gttacttttt gtcagactag cttaattctg cctttctttt tcttttattt atttttcaga
1681 aacacaatct cgctctgtag tctaggctga ccttgatttt actgggtagc ttatattgtc
1741 ctcaaactca tggcaatcct cctgccgcaa ctgggattat aggtgtatgt catcatcttt
1801 gacttttcct tctttctttt tttgttttgt tttgttttac gagacagggt ttctctgtgt
1861 atccctggct gtcctagaac tcactctgta gaccaggctg gccttgaact cagagatccg
1921 cctgtctctg cctcccaagt gctggaatta aaggcatgtg ccaccacgcc tttttttttt
1981 ttttagattt ttaaagattt atttatcaga cacatcagaa gagggcatca gatcacatta
2041 cagatggttg tgagccacca tgtggttgct gggatttgaa ctcaggacct tcggaagaac
2101 agtcagtgct cttaatcgct gagccatctc tccagccctt ttccttcttt cttaataata
2161 gccctagtgg aaacctgaca gagtcaatga taaggaaaac aaaaaaatca catagtaata
2221 ataataacaa caacaacaac atactgttaa cctctctgac atggagatgt gaccttcctt
2281 tcattgatga ctaaactaag aaaataactc atcctactgt gactcagaaa tgtctaaaat
2341 gagataaatg ccatccagtt gattccaaag cccatgccaa aacatcagac agcctcagta
2401 gagcaaatat actttaaata tagcctttca aagtatatat gtataattta atgcatgctc
2461 ctactcaaag tgattaaaat tgtttttaaa ggatcatttt tagctgtata tagtggcaga
2521 ggcaggcaaa tctcttagct tttctgcata gtgagtttca ggccaccgag tgcaacatgg
2581 tgagatcttg tcctaccatg acaaacataa tgacatgaca acaataataa aaataaacac
2641 tttaaaatat gttttttaaa atttatgtct aatggtcaaa caatactgtt tatgtacctg
2701 tctacagttt gtcagatgta tttctctatg ttaactttaa cataaataat gatagttgtt
2761 caaaagataa ttcaagatgg gtatggtgat atctgcctgc aatcccagta tttagggctg
2821 aatcaggaga actgaatgtg agggctacct gggctgccta agaatctaga gcccaccctg
2881 ggctatatta tattagtaag acctgactta aagagaagca gtaaagagtg agaggaagaa
2941 gagaaatctt ctataaagga tttgtatttt aagccccatt aaaatgtagt aaatccacta
3001 acagtctttt tttttttttc tttttctttt tcaggggagg gggggttgag actggatttc
3061 tctgtgtagc cctggctgtc ctgaactcac tctgtagacc aggctggcct caaactcaga
3121 aatccgcctg cctctgcctc cccagtactg ggactaaagg cgtgccccac cacgcctggc
3181 ttccactaac agtcttaacc tgctgttttt atgttactgg catactctat gtaaagcttc
3241 agtgcatttc tgatgctgga aactatatct gccaacacca attgtttcct ttaattttca
3301 tttcttttag taaaagatgg caaagccttt catccaactt atgaagaaaa actgaagttc
3361 gtggcactgc ataagcaagt tcttttgggc ccatataacc cagacacgtc ccctgaggtt
3421 ggattctttg atgtgttggg gaatgatagg aggagagaat gggcagctct gggaaacatg
3481 tccaaggagg atgccatggt agagtttgtg aagcttctaa ataagtgttg tcctctcctc
3541 tcggcatatg ttgcgtccca cagaatagag
//