LOCUS AK168799 3147 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 17 days embryo stomach cDNA, RIKEN full-length
enriched library, clone:I920055M10 product:acyl-Coenzyme A binding
domain containing 3, full insert sequence.
ACCESSION AK168799
VERSION AK168799.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3147)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I920055M10
FEATURES Location/Qualifiers
source 1..3147
/clone="I920055M10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I920055M10"
/db_xref="MGI:3571497"
/db_xref="taxon:10090"
/dev_stage="17 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="stomach"
misc_feature 1..3147
/note="acyl-Coenzyme A binding domain containing 3
(MGD|MGI:2181074 GB|NM_133225, evidence: BLASTN, 99%,
match=3146)"
/note="putative"
BASE COUNT 876 a 659 c 824 g 787 t
ORIGIN
1 ggtccccgcc gaggaggcgc tgcgagcgga gatggcggcg cagctgaacg tagagcagct
61 cgaggtgtcg ctcgacggtc tcacgctgag cccggactcg gaggagaggc ccggcgcgga
121 gggggccccg ccgcagacgc cgccgtcctc ggccccgggg aatggactgg gctccggcgc
181 ctcggggcag cagcgggagc ccggggaggc ggcggctgag ggcgcggccg aggaggcgcg
241 gcggatggag cagcactggg gctttggcct ggaggagctn tacggcctgg cgctgcgctt
301 ctacaaaata aaagatgggc aagcctttca tccaacttat gaagaaaaac tgaagttcgt
361 ggcactgcat aagcaagttc ttttgggccc atataaccca gacacgtccc ctgaggttgg
421 attctttgat gtgttgggga atgataggag gagagaatgg gcagctctgg gaaacatgtc
481 caaggaggat gccatggtag agtttgtgaa gcttctaaat aagtgttgtc ctctcctctc
541 ggcatatgtt gcgtcccaca gaatagagaa ggaagaagaa gagaaaagaa gaaaggcgga
601 ggaggagcga aggcagcgtg aagaggaaga acgagagcgg ctgcaaaagg aagaacagaa
661 gcggaagccg agaggaggaa gaccggctga gacgggagga ggaagagagg cggcggatag
721 aggaagagag gcttcggctg gaacagcaaa agcagcagat aatggcagct ttaaactcgc
781 agactgccgt gcaattccag cagtatgcag cccagcagta tccagggaac tacgaacaac
841 agcagattct catccgccag ctgcaggagc agcactatca gcagtatatg cagcagttat
901 atcaagtcca gcttgcacaa caacaggcag cattacagaa acagcaagaa gtagtgatgg
961 ctggggcatc attgcctgca tcatcaaagg tgaacacagc tggagcaagt gatacactgt
1021 cagttaatgg acaggccaaa acccacactg aaaattccga aaaagtcctt gagccagaag
1081 ctgcagaaga agccttggaa aatggaccaa aagactctct tccagtgatt gcaggtccat
1141 ccatgtggac aagaccacaa atcaaagact ttaaagagaa gattcggcag gatgcagatt
1201 ctgtgattac agtacgtcga ggagaagtcg tcaccgtccg agtcccgact catgaggaag
1261 gatcatacct attttgggaa tttgccacag acagttatga cattgggttt ggggttttat
1321 tttgaatgga cagactctcc aaatggtgct gtcagtgtgc atgtcagtga gtccagtgac
1381 gaggaggagg aggaggaaga aaatgtcact tgtgaagaaa aagcaaaaaa gaacgccaac
1441 aagcctctgc tggatgagat tgtacctgtg taccggcggg actgtcacga ggaagtatat
1501 gcaggcagcc accagtatcc agggagggga gtctatctcc tcaagtttga taattcctac
1561 tctctgtgga ggtccaagtc cgtctactac agagtctatt atactagata gagctgctgt
1621 tccagggtcg ggagtctagg gttgagcaca acatgacgtt taatttcctt tgacttttgt
1681 ggcgcatagg agtccgtgtt tatcttctcg attttgttct gagggtttat gaactcattg
1741 agaaccagga ttccttgaga ctctttagca ttagtgctct gaggttaaaa gcagttcgga
1801 agactcatct agcccttggg tgctgaccag cagagctgct agtggatatt ggagttacat
1861 gagctacgtg ttaatattca gtctccagaa taaacgtccc agcgttgccc tgacctggct
1921 ggagggcgca ttgctgtctg tgcctgtgtt gtgcacagcc acagttagta actggggaag
1981 cttctgtact agtctccttc aacgcagctg gctttgactg agtgctttga cagtttgaga
2041 cttcaccaag tatagtagaa aaacaaatgg cctcaacttg atcttacctg agtaaccaag
2101 gctgcttttg ctttgggtac agctatttag ttagttgtgt tacaaagaat tattttctga
2161 gagaatctta aacttagaat attcagatgc agtagatact ggcgtgtgga gattcacaga
2221 cgacctcagc acccatccca ccaggtccct ggactcacgg cctttccttc atttgccatt
2281 cacattgctg ctcacaaaac agaactcggt gactttgttt tgatatagtt ttgtggacca
2341 tctcaaatta aaactatttt ctgtaaaaaa tctatagcca ggagttttat aaactcacct
2401 ggcacctact gagctaaaat atgcaaaatc tgaactaaaa tatgcaaaat cactttaata
2461 taatttgaca tttgaggagt accattgcac taacaggaaa tcactgccgg agacagccca
2521 catttccttg tagttgttat tagggcacaa accactccac agtcccagtg tggagtcaca
2581 gtctagagag aattggaaat gcacgtgctt aaatgataca gctttaatct gtattatgac
2641 tgctggtgta agaggaatat ctttaaattt cttatgaaaa caaatccaca ttcattattt
2701 cacatttgtc taagaggtta agtatctgaa gggagggtag tgtagatagc aaatgacaga
2761 gacagtacac acctagtgta ttgtcactga agtcttaggt ttaactttga catcacaggt
2821 cccttccagg ggtaccactg ggtagctgca gtgtgcaccg gtcactacat tcaggctatt
2881 tgaggttttc atatgctgca tttctttgtt tttaacacct ggttttatag gttctctttc
2941 gtttgttaag aaactggatt cttttctcct aaccagtgct taatttgtgt ttttggattt
3001 tctttcagaa gtagtcaaat gtctatgctg ttacatccag aatattcatt aggctgcccc
3061 acagctcttc tgtatatata gagaccacag agttaggatt ttttttaatg agaaaaatac
3121 tgtatttaaa atgtaaaata aactttt
//