LOCUS AK167879 880 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
clone:I730035C02 product:H3 histone, family 3A, full insert
sequence.
ACCESSION AK167879
VERSION AK167879.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 880)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I730035C02
FEATURES Location/Qualifiers
source 1..880
/cell_line="TIB-55 BB88"
/clone="I730035C02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I730035C02"
/db_xref="MGI:3566698"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="BALB/C"
CDS 116..526
/codon_start=1
/note="H3 histone, family 3A (MGD|MGI:1097686
GB|NM_008210, evidence: BLASTN, 100%, match=879)"
/note="putative"
/protein_id="BAE39892.1"
/transl_table=1
/translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
BASE COUNT 243 a 201 c 201 g 235 t
ORIGIN
1 gaattgtgtt cgcagccttc gccgcgccgc tgccgctctc caacgccagc gccgcctctc
61 gcttgccgag ctccagccga aggagaaggg gggtaagtaa ggaggtgtcc ttaccatggc
121 tcgtacaaag cagactgccc gcaaatccac cggtggtaaa gcacccagga aacaactggc
181 tacaaaagcc gctcgcaaga gtgcgccctc tactggaggg gtgaagaaac ctcatcgtta
241 caggcctggt actgtggccc tccgtgaaat cagacgctat cagaagtcca ctgaacttct
301 gatccgcaag ctcccctttc agcgtctggt gcgagaaatt gctcaggact tcaaaacaga
361 tctgcgcttc cagagtgcag ctattggtgc tttgcaggag gcaagtgagg cctatctggt
421 tggccttttt gaagatacca atctgtgtgc tatccatgcc aaacgtgtaa caattatgcc
481 aaaagatatc cagctagcac gccgcatacg cggagaacgt gcttaagagt ccactatgag
541 gggaaacatt tcattctcaa aaaaattttt tttcctcttc ttcctgttat cagtagttct
601 gaatgttaga tattttttcc atggggtcaa aggtacctaa gtatatgatt gcgagtggaa
661 acatagggga cagaatcagg tattggcgtt tctccacgtt catttgtgtg tgaattttta
721 atataaatgc aagatggaaa gcattaatgc aagcaaaatg tttcagtgaa cacatttcaa
781 cagttcaact ttataacaat tataaataaa cctgttaaaa ttttctggac aatgccagca
841 tttggatttt tttaaaataa gtaaatttct tattgacggc
//