LOCUS AK167699 3564 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 14 days pregnant adult female amnion cDNA, RIKEN
full-length enriched library, clone:I530028O16
product:ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
polymerase) 1, full insert sequence.
ACCESSION AK167699
VERSION AK167699.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3564)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I530028O16
FEATURES Location/Qualifiers
source 1..3564
/clone="I530028O16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I530028O16"
/db_xref="MGI:3566384"
/db_xref="taxon:10090"
/dev_stage="14 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="amnion"
CDS 52..3096
/codon_start=1
/note="ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
polymerase) 1 (MGD|MGI:1340806 GB|NM_007415, evidence:
BLASTN, 99%, match=3562)"
/note="putative"
/protein_id="BAE39743.1"
/transl_table=1
/translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF
DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS
GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP
TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE
VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG
ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW
VTPKEFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTAVNSSAPADKPLS
NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA
NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVASKGKSAAPSKKSK
GAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT
NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN
AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM
KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI
PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK
TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN
RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD
PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG
TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW"
regulatory 3544..3549
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3564
/note="putative"
BASE COUNT 956 a 877 c 1025 g 706 t
ORIGIN
1 gggagcgcac cagcggcggc gtcgggctgc cgctgcagca cgagaaggag gatggcggag
61 gcctcggaga ggctttatcg agtggagtac gcgaagagcg ggcgcgcctc ttgcaagaaa
121 tgcagcgaga gtattcccaa ggactccctc cgcatggcca tcatggtgca gtcacccatg
181 ttcgatggga aagtcccaca ctggtaccac ttctcctgct tctggaaggt gggccactcc
241 atccggcagc ctgatgttga ggtggatggc ttctctgagc tgcgctggga tgatcagcag
301 aaggtcaaga agacggccga ggctggaggc gtggcaggca aaggccagga tggaagtggc
361 ggcaaggcgg agaagacatt gggtgacttt ttagcggagt acgccaagtc caacaggagc
421 atgtgcaagg gctgcctgga gaagatagag aagggccaga tgcgcctgtc caagaagatg
481 gtggatccag agaagccaca gctgggtatg attgaccgct ggtaccatcc aacttgcttt
541 gtcaagaagc gggacgagct gggcttccgg cctgagtaca gtgccagtca gctcaagggc
601 tttagcctcc tctctgcaga agacaaagaa gctctgaaga agcagctccc ggccatcaag
661 aatgaaggaa agagaaaagg tgacgaggtg gatggaacag atgaagtggc caaaaagaaa
721 tctaagaaag ggaaggacaa ggatagtagt aagctggaga aggccctcaa ggctcagaat
781 gagctgatct ggaatatcaa agacgagctg aagaaagcgt gttccaccaa cgacctgaag
841 gagctgctca tcttcaacca gcagcaggtg ccgtcaggag agtcagcgat cttggacaga
901 gttgctgacg gcatggcgtt tggggccctt ctgccctgca aggagtgttc aggccagctg
961 gtctttaaga gcgacgctta ttactgtact ggggatgtca ctgcctggac caagtgcatg
1021 gtcaagacac agaatcctag ccgaaaggaa tgggtaactc caaaggaatt ccgagaaata
1081 tcctacctca agaagttaaa ggtcaaaaaa caggaccgaa tattccctcc agaaagcagc
1141 gccccagcac cactggcact gcccctctct gtcacctcag cacccacagc tgtgaactcc
1201 tctgctccag cagacaagcc cctgtctaac atgaagatcc tgactcttgg gaagctctcc
1261 cagaacaagg acgaagcaaa agctgtgatt gagaaactcg gaggcaagtt gacaggatct
1321 gccaacaagg cctccttgtg tatcagcact aaaaaggagg tggagaagat gagtaagaag
1381 atggaggaag tgaaagcggc caacgttcga gttgtgtgtg aggacttcct ccaggacgtg
1441 tctgcctcca ctaaaagcct ccaagagctg ctctcggccc acagcttgtc ctcgtggggg
1501 gctgaggtga aggcagagcc tggtgaagtg gtggcctcca aggggaagtc agctgcaccc
1561 tccaagaaga gcaagggtgc tgtcaaggag gaaggtgtca acaaatctga aaagaggatg
1621 aaattaactc tgaagggagg agcagccgtt gatcctgact ctggtctgga acactctgca
1681 cacgtcctgg agaaaggtgg gaaggtgttc agcgccacac ttggcctggt ggacattgtg
1741 aaagggacga actcctatta caaactgcag cttctggagg acgacaagga gagcaggtac
1801 tggatcttcc ggtcctgggg ccgggtgggc acagttatcg gcagtaacaa acttgagcag
1861 atgccctcca aagaggacgc tgttgagcac ttcatgaagc tgtatgaaga gaagactggg
1921 aatgcctggc actcgaaaaa cttcacaaag tatcccaaga agttctaccc tctggagatt
1981 gactatggcc aggacgaaga ggcagtaaag aagctgacgg tgaagcctgg caccaagtcg
2041 aagctgccga agccagtgca ggagctcgtg gggatgatct tcgacgtgga gagcatgaaa
2101 aaggccttgg tggagtacga gattgacctc cagaagatgc ccttggggaa gctgagcaga
2161 aggcagatcc aggccgccta ctctatcctc agcgaggtcc agcaggcagt gtctcaaggc
2221 agcagtgaat cccagatcct agatctctcc aatcgcttct acactctgat cccccatgac
2281 tttggaatga agaagccccc actcctgaac aacgcagaca gcgtgcaggc caaggtggag
2341 atgctagaca acctcctgga catcgaggtg gcctatagtc ttctcagggg tggctctgac
2401 gacagcagca aggatcccat cgacgtcaac tacgagaaac tcaaaactga cattaaggtg
2461 gttgacagag attctgaaga ggccgaggtc atcaggaagt acgtgaagaa cactcatgct
2521 accacgcaca acgcctatga cctggaagtg atcgatatct tcaagataga gcgcgagggg
2581 gagagccagc gctacaagcc cttcaggcag cttcacaacc ggaggctgct gtggcacggc
2641 tccaggacca ccaactttgc tggcatcctg tcgcagggtc tgcggatagc cccacctgaa
2701 gcgcctgtga caggctacat gtttgggaaa gggatctact ttgccgacat ggtgtccaaa
2761 agtgcaaact actgccacac atctcaggga gacccgattg gcttaatact gctgggagag
2821 gttgcccttg gaaacatgta tgaactcaag catgcttcac atatcagcaa gttacccaag
2881 ggcaagcaca gtgtcaaagg tttgggaaaa accacccctg acccttcggc cagcatcacc
2941 ctggagggtg tagaggttcc actgggaaca gggatcccat ctggtgtcaa cgacacctgc
3001 ctgctgtata atgagtacat tgtctacgac attgctcagg tgaatctcaa atacctgctg
3061 aaactcaagt tcaattttaa gacatccctg tggtaaagtg cgaggggtgg gctgtgccca
3121 gcacccaggg cctagggggc aattctccct agtgcctctg caccagacac cacaaaacct
3181 cagccatgct gccgccgaag ggtggccccc tcaccgaatc tccttaggaa gggttttata
3241 cagacaggtt aaagggctct ggtttcaagt cccttgtcca tgctgcactg gggcaggccg
3301 gttgtttgtg gtttgtccta ccagccacag ctccatagac agcagctggc agtagagcaa
3361 aagttgggga gaggattttg ttgtttgcct agactagtcc tgagggaaga aacaccacgt
3421 cacagtcacg atgtctgcct tactggcttc cccagggaag gaaaaatgtg cttcctccct
3481 tttttcaagg gttcatcttt gctttaattt tggcaaaatg ttaagcattt attttgagct
3541 aaaaataaaa gttaatttca tacc
//