LOCUS AK167272 1421 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus blastocyst blastocyst cDNA, RIKEN full-length
enriched library, clone:I1C0048M22 product:acyl-Coenzyme A binding
domain containing 3, full insert sequence.
ACCESSION AK167272
VERSION AK167272.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1421)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I1C0048M22
FEATURES Location/Qualifiers
source 1..1421
/cell_type="blastocyst"
/clone="I1C0048M22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I1C0048M22"
/db_xref="MGI:3564649"
/db_xref="taxon:10090"
/dev_stage="blastocyst"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 42..>1421
/codon_start=1
/note="acyl-Coenzyme A binding domain containing 3
(MGD|MGI:2181074 GB|NM_133225, evidence: BLASTN, 99%,
match=1420)"
/note="putative"
/protein_id="BAE39384.1"
/transl_table=1
/translation="MAAQLNVEQLEVSLDGLTLSPDSEERPGAEGAPPQTPPSSAPGN
GLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFGLEELYGLALRFYKIKDGKAFHPT
YEEKLKFVALHKQVLLGPYNPDTSPEVGFFDVLGNDRRREWAALGNMSKEDAMVEFVK
LLNKCCPLLSAYVASHRIEKEEEEKRRKAEEERRQREEEERERLQKEQEKRKREEEDP
LRREEEERRRIEEERLRLEQQKQQIMAALNSQTAVQFQQYAAQQYPGNYEQQQILIRQ
LQEQHYQQYMQQLYQVQLAQQQAALQKQQEVVMAGASLPASSKVNTAGASDTLSVNGQ
AKTHTENSEKVLEPEAAEEALENGPKDSLPVIAAPSMWTRPQIKDFKEKIRQDADSVI
TVRRGEVVTVRVPTHEEGSYLFWEFATDSYDIGFGVYFEWTDSPNAAVSVHVSESSDE
EEEEEENVTC"
BASE COUNT 399 a 322 c 452 g 248 t
ORIGIN
1 ggccgccgcc tgtccccgcc gaggaggcgc tgcgagcgga gatggcggcg cagctgaacg
61 tagagcagct cgaggtgtcg ctcgacggtc tcacgctgag cccggactcg gaggagaggc
121 ccggcgcgga gggggccccg ccgcagacgc cgccgtcctc ggccccgggg aatggactgg
181 gctccggcgc ctcggggcag cagcgggagc ccggggaggc ggcggctgag ggcgcggccg
241 aggaggcgcg gcggatggag cagcactggg gctttggcct ggaggagctt tacggcctgg
301 cgctgcgctt ctacaaaata aaagatggca aagcctttca tccaacttat gaagaaaaac
361 tgaagttcgt ggcactgcat aagcaagttc ttttgggccc atataaccca gacacgtccc
421 ctgaggttgg attctttgat gtgttgggga atgataggag gagagaatgg gcagctctgg
481 gaaacatgtc caaggaggat gccatggtag agtttgtgaa gcttctaaat aagtgttgtc
541 ctctcctctc ggcatatgtt gcgtcccaca gaatagagaa ggaagaagaa gagaaaagaa
601 gaaaggcgga ggaggagcga aggcagcgtg aagaggaaga acgagagcgg ctgcaaaagg
661 aacaagagaa gcggaagcga gaggaggaag acccgctgag acgggaggag gaagagaggc
721 ggcggataga ggaagagagg cttcggctgg aacagcaaaa gcagcagata atggcagctt
781 taaactcgca gactgccgtg caattccagc agtatgcagc ccagcagtat ccagggaact
841 acgaacaaca gcagattctc atccgccagc tgcaggagca gcactatcag cagtatatgc
901 agcagttata tcaagtccag cttgcacaac aacaggcagc attacagaaa cagcaagaag
961 tagtgatggc tggggcatca ttgcctgcat catcaaaggt gaacacagct ggagcaagtg
1021 atacactgtc agttaatgga caggccaaaa cccacactga aaattccgaa aaagtccttg
1081 agccagaagc tgcagaagaa gccttggaaa atggaccaaa agactctctt ccagtgattg
1141 cagctccatc catgtggaca agaccacaaa tcaaagactt taaagagaag attcggcagg
1201 atgcagattc tgtgattaca gtacgtcgag gagaagtcgt caccgtccga gtcccgactc
1261 atgaggaagg atcataccta ttttgggaat ttgccacaga cagttatgac attgggtttg
1321 gggtttattt tgaatggaca gactctccaa atgctgctgt cagtgtgcat gtcagtgagt
1381 ccagtgacga ggaggaggag gaggaagaaa atgtcacttg c
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