LOCUS AK167017 2207 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus blastocyst blastocyst cDNA, RIKEN full-length
enriched library, clone:I1C0027L20 product:WD repeat domain 26,
full insert sequence.
ACCESSION AK167017
VERSION AK167017.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2207)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I1C0027L20
FEATURES Location/Qualifiers
source 1..2207
/cell_type="blastocyst"
/clone="I1C0027L20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I1C0027L20"
/db_xref="MGI:3564254"
/db_xref="taxon:10090"
/dev_stage="blastocyst"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS <1..276
/codon_start=1
/note="WD repeat domain 26 (MGD|MGI:1923825 GB|NM_145514,
evidence: BLASTN, 100%, match=721)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE39191.1"
/transl_table=1
/translation="FYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTR
TVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS"
regulatory 2183..2188
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2207
/note="putative"
BASE COUNT 668 a 428 c 454 g 657 t
ORIGIN
1 ttttatacaa tccactcgtg ttttggaggc cataatgaag acttcattgc tagtggcagc
61 gaagatcaca aggtttacat ctggcacaaa cgtagtgaac tgccaattgc ggagctcaca
121 gggcacacgc gcacagtaaa ttgtgttagc tggaacccac agattccatc catgatggcc
181 agtgcctcag acgatggcac tgttagaata tggggaccag cacctttcat agaccaccag
241 aatattgaag aggaatgcag tagcatggat agttgatggc aaatttggag cagacgactt
301 ctgtttaact taaaattagt cgtattttaa tggcttggga tttggtgcaa acaaacatga
361 ttgatagctg gacagacatg ctcgtcatga aaaaaaaaaa aaaagaacca ttttgaagcc
421 cgattggggc caaacattta caccttgctt cctagtaacc agttgatgaa gcgcgtctag
481 aacgttgttg gacaccatgt tgaattattc cccatcggtt gtgaagaact gtgctacatt
541 caggcttacc cattgaactc agtatatata ttttttccct cctgcctttt gtctggtggg
601 acaccattct tgttgctctt ctgtgtaatg aagttcaaat gcttgtttgg aaactttatt
661 taacagttta gaaggcttga taggaagagg tcattagtct gaagagtata cattggacag
721 gaaagaattt cctttcgttt ctccaaatct ttccgcctta tttagcgtga gatctttgca
781 gcttggttca tggattctag ccttgcccgt tgcgcagtat atgctgatca gatgataaac
841 cagtgaacta tgtcaaaagc actctcaata ttacatttga caaaaagttt tgtacttttc
901 acatagttgt tgccccgtaa aagggttaac agcacaattt tttaaaaata aattaagaag
961 tatttatagg attaaagtga cttcatttgt atacatttgg aatctaaacc agcttaaaaa
1021 cagtgtcctc tgtgactgag atatgcagtg taactgatgc tcttctggag tgccacgtga
1081 gacatggcat ggtcagaaac agtgttcaga aggacacggc acaggaaagc cagagagata
1141 ctttcccctt tttattttat tcctgaaggg acatcagtac ctgatactga agaaattcaa
1201 gattcaaaag gaaaatttta taaataaacc agtacagaag atcagcatca gtctaggttt
1261 tcaagaaagc ttgttccaag ttctctgaac ttgagggaat cgttttgatg tgatctagca
1321 gaagtagaca tcagaagata gacctacttt gggaatttat agtgtagtta aatcttagag
1381 gaagtcagca ggctacaaac atttatgtaa actggaatta aagcctgagt catttctcct
1441 aattgccctt aatgtccaac atatagggac actcatttaa agaagattcc ttctcagctt
1501 ctcagatgtt gccataatga acctcattca aactggtgct gtggacagtc tttccctctc
1561 cctccccttt tagtttacgg gaatgtttcc tttatggaaa aaaagtgact tgtcattttg
1621 aagaccctat atctaacata agcctgattg atgttcatgg tgttttcaac tccataattg
1681 ctgggtctaa ccagtctccc ttgaaatcca tgttttccaa taggagataa ccagggtgac
1741 cacagctctt ggaaggaaaa gtggaattaa ctccaatgta tcctgatgaa caacaacaac
1801 aaaaatctgg tacaacttgc ccttgaggcc aagccaagtc catagcattc accatgatca
1861 tatgcccctc gggatcctga gagaagagag aggcttgtac tgaggggtct tcccattgtg
1921 ggggtcgcag ggagggaaaa gccaggaagg cagtggtcat tctcccaaag tccacccatc
1981 gtaaggaggt gacagatcgg agtcagcaga ttagtaattc aaatgggtaa tggaaaagat
2041 tcctttaagc ttcatttttc agagaccatc actttagaaa atcagagaaa tcctgttttg
2101 atacttctta gttaaaataa tatgttaccg tttatctggt acttcatttt cttgactaaa
2161 attacttttc actttaagct tgaataaaaa ttttcattca taactgc
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