LOCUS AK165618 1436 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus RCB-1283 B16 melanoma cDNA, RIKEN full-length enriched library, clone:G430067C03 product:pyrroline-5-carboxylate reductase family, member 2, full insert sequence. ACCESSION AK165618 VERSION AK165618.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1436) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G430067C03 FEATURES Location/Qualifiers source 1..1436 /cell_line="RCB-1283 B16 melanoma" /clone="G430067C03" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G430067C03" /db_xref="MGI:3560692" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" CDS 166..1128 /codon_start=1 /note="putative" /note="pyrroline-5-carboxylate reductase family, member 2 (MGD|MGI:1277956 GB|NM_133705, evidence: BLASTN, 100%, match=1426)" /protein_id="BAE38298.1" /transl_table=1 /translation="MSVGFIGAGQLACALARGFTAAGVLSAHKIIASSPDMDLPTVSA LRRMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTIS SVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCT EVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLL DSEDHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEK VSPAALKKTLLDRVKLESPTVSTLAPPSSGKLLTRNPAQGSKKE" BASE COUNT 280 a 408 c 462 g 286 t ORIGIN 1 cgggggggat gctctgggat acttggggcc tctctagcag ttcatctggt gcatcccggt 61 ttgaaagctg ttccgagcaa ttcgggtcca tctttttcca cgcgcggaca ctgaccccgg 121 gatccccaga gtccccggat cggcgctcgc cgggatcctg cggccatgag cgtgggtttc 181 atcggcgcag gccagctggc ctgtgctctg gcgcggggct tcacggccgc gggcgtcctg 241 tcggctcaca agataatagc cagctccccg gatatggacc tgcccacggt gtctgcgctc 301 aggaggatgg gtgtgaatct gacccgaagc aataaggaca ctgtgcggca cagcgacgtc 361 ctgttcctgg ctgtgaagcc ccacatcatc cccttcatcc tggatgagat tggagccgac 421 gtgcaggaga ggcacatcgt ggtctcctgt gcagccgggg tcaccatcag ttctgtggag 481 aagaagctga tggctttcca gccggccccc aaagtgatcc gctgcatgac caacacgccc 541 gtggtggtcc gagagggggc caccgtgtat gccacgggca cccatgctct ggtggaagac 601 ggcaagcttt tggagcagct gatgagcagt gtgggcttct gcacagaggt ggaggaagac 661 ctcattgatg ctatcaccgg gctcagcggc agcgggcctg cctatgcatt catggccctg 721 gacgccctgg cagatggtgg ggtgaagatg ggcgtgccgc ggcgcctggc ggtcagactg 781 ggagctcagg cgttgctggg agcagctaag atgctgctgg actcagagga ccatccaggc 841 cagctcaagg acaacgtctg ctcccctggg ggggccacca tccatgccct gcacttcctg 901 gagagtgggg gcttccgctc tctgctcatc aatgcggttg aggcctcctg tatccgaacc 961 agagaactgc agtccatggc tgaccaagaa aaggtgtctc ctgctgccct taagaagacc 1021 cttctggaca gagtgaagct ggagtcaccc acggtgtcca cgctggcccc acccagctca 1081 gggaaactcc ttacaagaaa ccccgcccag ggaagcaaga aggagtgagg aggactctgt 1141 agggtgtccc tgtcccctgt agtacaggga ggggcaggct caggtctggg ggtgaagctg 1201 cttacatctg ttcacctggt gccaccgagt ccttctcctg tcccgtggca gaaggtgctc 1261 tgaagaggcg gctgatgcca gaagtcagca tgcctctctg agagaggtgg aggccttaga 1321 gttagcatcc ccctcagcgg aagtctgtgg agagctttag ttagatccga ggctgcttca 1381 gattgatctc caggtgaggt gagaggaaac gggaatcctc tgaattaaaa acacgc //