LOCUS AK165272 3157 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate spleen cDNA, RIKEN full-length
enriched library, clone:F430007G22 product:unclassifiable, full
insert sequence.
ACCESSION AK165272
VERSION AK165272.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3157)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F430007G22
FEATURES Location/Qualifiers
source 1..3157
/clone="F430007G22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F430007G22"
/db_xref="MGI:3551991"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spleen"
misc_feature 1..3157
/note="putative"
/note="unclassifiable"
BASE COUNT 875 a 538 c 660 g 1083 t
ORIGIN
1 gttaactaac tgtgatttta gacaagttaa actgcattaa gcttgaggtt attgagctgt
61 gatgagtata tttatattta ctgcatggtt ttattttaat ttaatttatt tatttttgag
121 ttacactgtg ctctataaat gctttgcttt taattcagga gggatttaca gtagtttatg
181 taataaagta aatgtctttt ttttcttctc catagggaaa aatggactag catgcttagc
241 ttgtggtcca caacttgaag ttgtaaactc cctaacagga gagcggttat ctgcatatag
301 attcagtgga gtaaatgaac agcctcctgt agtccttgca gtgaaagaat tctcttggca
361 taagaggact ggattgttaa taggattgga agaagcagat gggagtgttc tttgtcttta
421 tgaccttggt atatcaagag tggtcaaagc agttgttctt cctggaaggg tatgtactat
481 ttaagatgcc ttgatagttt tgcttttcaa actgaaagct cacaagatgt gctcacctta
541 aaaactcatc gaattgtaca ttaacaatta atgtattttt gtgtaattat ccccttcaat
601 atatagttca aaaattttat ttaggcgtgc gtgcttgtgt gcatgtatat atgtatatac
661 atcacgtgct cgtgtggtgg tcagaggaca acttgtggga cacagacctt tccttttacc
721 tttatttggg ttctagacat caaatacagg ttgtcaggct tgcatcattg ggtagcaagt
781 agctctactg tctgaaccat tttactggcc ccttcaagtt taagatgacc aggcatggct
841 gtacgttagt ttaattctag cactcaggag acagacaggt gagtctcttg tattgaaggc
901 aagcctcatc ttctatgtat agttaccgat aagttagggc tacacagtga caccctaact
961 taagaaaaaa aaggcagatt ataaaaagag ttggtaccca tctcttaaaa tatattgaag
1021 tttaaatagt aatgtttgtt ttgcctgcat atatctgtgt gctatgtgta agcaataccc
1081 acagaggcta gaagagggca ttgtatctgc tggaattgaa gttaaaaatg gttgttagcc
1141 atcatgttgg tactgggaat tgaaccctat atctctggaa gagcagctga gccatttctc
1201 cagccctggt tttatccggt ttgataaaaa tacaacagac attttgtttg gggtgtgtgt
1261 gtgcatattg ccttttttgc tgttatgtaa tttggaaagt gtcttagtca ctgttctatt
1321 cctatgaaga gacactatga ccaagacaac tcttagaaga agacatgtaa ttgggggggc
1381 ttgcttacag tctccgaggc ttaattcctt ataatcatgg ccaggatcat ggcaacgggc
1441 aggcttggtg ggcaagtacc tgagagctgt atcctgattc ccaggcagag agacagaaca
1501 gggacagaac ctgagcctat catgtgcttt taaaatctca aggccacacc tactccaaca
1561 gggacagggc tcctaatcct tctaatccat tctaacagtt ctgctgcctg gtgactagac
1621 attgaaatgt gtgggccatt cttattcaaa gcactgcaga aaggtaaact aaactttttt
1681 ctgaaatgat tagtttactc ttcttacatt gggtgatgct gaactggctg cttgtaagct
1741 ctaaactgaa gacagcattg ctttgagttg tgtgcttaag aattttatga tttttcaaca
1801 agatggataa acccttagcc agactaacca gaggccacag agacagtatc caaattaaca
1861 aaatcaggaa agaaaaggga gacataacaa tgaaagctat cgtaaaataa ttattctgtt
1921 tgttgaatat taacagttga aaatattaaa atcatgttct acaaaaaata attttatgat
1981 ttttttattt gttttaagtt tcagtctact tcatctttaa acagataatt gcatataatt
2041 cagtaaaaag attataataa ataaaatgag ccagctaagc aaatgactga cacagactaa
2101 gctgtcaata aatattggtt aattttcata ttttattatg ttaactaata gcttaatttt
2161 gttgtatatt tgagagttgc actgttttct tagattcatg ggtgtcatgc agacttatgg
2221 ttccgtgtgt tatttaagac tgtttaagtt actaacctgc cctaatataa actcctatat
2281 gttgtacagt tgatttagct tctaatccca ttctggatcc taggtaacag ctatcgagcc
2341 tataattaac catggaggag ccagtgcgag tacccagcat ttacatccaa gtctccggtg
2401 gctttttggc gtggccgctg tggtgactga tgttggacag atccttctta tngacctgtg
2461 tttggatgac ttgtcctgca gtcagaatga agttgaggca tcaggtaatt catctgtttg
2521 ttactgggaa acaaaaattg agcatttcag tgttgtgtgt aataggactt ttggcttttt
2581 cagataatgt ttctctgtgt ggccccagct gtcctggaac ttgctctgta gactgtgctg
2641 gctttaactc aagagatctg ggttgatgtt taagtggcca attgtttcat atagaatttt
2701 tttttttaat tatgtgtacc taggcatcct agtcctcttg gctaagtcat tttattttat
2761 tttattttat tttattttat tttattttat tggtgtgttg atatactaaa gcagaccttg
2821 aaagatgtag gatgtgggtg attgaagcag caggattgtg agctcagggg aacgtggatg
2881 gatctgtaac gctccaggcc acagctctgc ctactttctt ttctttttta tttaattttt
2941 tacttttagc aaaaattttt ttaaacttta atgtatgagt gctctgttgc atatacatcc
3001 tgcttgcctg aagagggcat catatcgccc tataggtggt tgtgagccac catgtggttg
3061 ctgggagttg aactcaggac ctctggaaga gccgcttgtg ctcttaaccg ctgagccatc
3121 tcatcagccc cagctctgct taataagact ctttctc
//