LOCUS AK165158 3593 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length
enriched library, clone:E860006E14 product:ADP-ribosyltransferase
(NAD+; poly (ADP-ribose) polymerase) 1, full insert sequence.
ACCESSION AK165158
VERSION AK165158.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3593)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E860006E14
FEATURES Location/Qualifiers
source 1..3593
/cell_type="8 cells"
/clone="E860006E14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E860006E14"
/db_xref="MGI:3551681"
/db_xref="taxon:10090"
/dev_stage="8 cells embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
misc_feature 1..3593
/note="ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
polymerase) 1 (MGD|MGI:1340806 GB|AK088679, evidence:
BLASTN, 99%, match=3575)"
/note="putative"
BASE COUNT 963 a 886 c 1034 g 710 t
ORIGIN
1 acgcttgcgg gggaaaccga cacgttagcg gagcgcacca gcggcggcgt cgggctgccg
61 ctgcagcacg agaaggagga tggcggaggc ctcggagagg ctttatcgag tggagtacgc
121 gaagagcggg cgcgcctctt gcaagaaatg cagcgagagt attcccaagg actccctccg
181 catggccatc atggtgcagt cacccatgtt cgatgggaaa gtcccacact ggtaccactt
241 ctcctgcttc tggaaggtgg gccactccat ccggcagcct gatgttgagg tggatggctt
301 ctctgagctg cgctgggatg atcagcagaa ggtcaagaag acggccgagg ctggaggcgt
361 ggcaggcaaa ggccaggatg gaagtggcgg caaggcggag aagacattgg gtgacttttt
421 agcggagtac gccaagtcca acaggagcat gtgcaagggc tgcctggaga agatagagaa
481 gggccagatg cgcctgtcca agaagatggt ggatccagag aagccacagc tgggtatgat
541 tgaccgctgg taccatccaa cttgctttgt caagaagcgg gacgagctgg gcttccggcc
601 tgagtacagt gccagtcagc tcaagggctt tagcctcctc tctgcagaag acaaagaagc
661 tctgaagaag cagctcccgg ccatcaagaa tgaaggaaag agaaaaggtg acgaggtgga
721 tggaacagat gaagtggcca aaaagaaatc taagaaaggg aaggacaagg atagtagtaa
781 gctggagaag gccctcaagg ctcagaatga gctgatctgg aatatcaaag acgagctgaa
841 gaaagcgtgt tccaccaacg acctgaagga gctgctcatc ttcaaccagc agcaggtgcc
901 gtcaggagag tcagcgatct tggacagagt tgctgacggc atggcgtttg gggcccttct
961 gccctgcaag gagtgttcag gccagctggt ctttaagagc gacgcttatt actgtactgg
1021 ggatgtcact gcctggacca agtgcatggt caagacacag aatcctagcc gaaaggaatg
1081 ggtaactcca aaggaattcc gagaaatatc ctacctcaag aagttaaagg tcaaaaaaca
1141 ggaccgaata ttccctccag aaagcagcgc cccagcacca ctggcactgc ccctctctgt
1201 cacctcagca cccacagctg tgaactcctc tgctccagca gacaagcccc tgtctaacat
1261 gaagatcctg actcttggga agctctccca gaacaaggac gaagcaaaag ctgtgattga
1321 gaaactcgga ggcaagttga caggatctgc caacaaggcc tccttgtgta tcagcactaa
1381 aaaggaggtg gagaagatga gtaagaagat ggaggaagtg aaagcggcca acgttcgagt
1441 tgtgtgtgag gacttcctcc aggacgtgtc tgcctccact aaaagcctcc aagagctgct
1501 ctcggcccac agcttgtcct cgtggggggc tgaggtgaag gcagagcctg gtgaagtggt
1561 ggcccccaag gggaagtcag ctgcaccctc caagaagagc aagggtgctg tcaaggagga
1621 aggtgtcaac aaatctgaaa agaggatgaa attaactctg aagggaggag cagccgttga
1681 tcctgactct ggtctggaac actctgcaca cgtcctggag aaaggtggga aggtgttcag
1741 cgccacactt ggcctggtgg acattgtgaa agggacgaac tcctattaca aactgcagct
1801 tctggaggac gacaaggaga gcaggtactg gatcttccgg tcctggggcc gggtgggcac
1861 agttatcggc agtaacaaac ttgagcagat gccctccaaa gaggacgctg ttgagcactt
1921 catgaagctg tatgaagaga agactgggaa tgcctggcac tcgaaaaact tcacaaagta
1981 tcccaagaag ttctaccctc tggagattga ctatggccag gacgaagagg cagtaaagaa
2041 gctgacggtg aagcctggca ccaagtcgaa gctgccgaag ccagtgcagg agctcgtggg
2101 gatgatcttc gacgtggaga gcatgaaaaa ggccttggtg gagtacgaga ttgacctcca
2161 gaagatgccc ttggggaagc tgagcagaag gcagatccag gccgcctact ctatcctcag
2221 cgaggtccag caggcagtgt ctcaaggcag cagtgaatcc cagatcctag atctctccaa
2281 tcgcttctac actctgatcc cccatgactt tggaatgaag aagcccccac tcctgaacaa
2341 cgcagacagc gtgcaggcca aggtggagat gctagacaac ctcctggaca tcgaggtggc
2401 ctatagtctt ctcaggggtg gctctgacga cagcagcaag gatcccatcg acgtcaacta
2461 cgagaaactc aaaactgaca ttaaggtggt tgacagagat tctgaagagg ccgaggtcat
2521 caggaagtac gtgaagaaca ctcatgctac cacgcacaac gcctatgacc tggaagtgat
2581 cgatatcttc aagatagagc gcgaggggga gagccagcgc ctacaagccc ttcaggcagc
2641 ttcacaaccg gaggctgctg tggcacggct ccaggaccac caactttgct ggcatcctgt
2701 cgcagggtct gcggatagcc ccacctgaag cgcctgtgac aggctacatg tttgggaaag
2761 ggatctactt tgccgacatg gtgtccaaaa gtgcaaacta ctgccacaca tctcagggag
2821 acccgattgg cttaatactg ctgggagagg ttgcccttgg aaacatgtat gaactcaagc
2881 atgcttcaca tatcagcaag ttacccaagg gcaagcacag tgtcaaaggt ttgggaaaaa
2941 ccacccctga cccttcggcc agcatcaccc tggagggtgt agaggttcca ctgggaacag
3001 ggatcccatc tggtgtcaac gacacctgcc tgctgtataa tgagtacatt gtctacgaca
3061 ttgctcaggt gaatctcaaa tacctgctga aactcaagtt caattttaag acatccctgt
3121 ggtaaagtgc gaggggtggg ctgtgcccag cacccagggc ctagggggca attctcccta
3181 gtgcctctgc accagacacc acaaaacctc agccatgctg ccgccgaagg gtggccccct
3241 caccgaatct ccttaggaag ggttttatac agacaggtta aagggctctg gtttcaagtc
3301 ccttgtccat gctgcactgg ggcaggccgg ttgtttgtgg tttgtcctac cagccacagc
3361 tccatagaca gcagctggca gtagagcaaa agttggggag aggattttgt tgtttgccta
3421 gactagtcct gagggaagaa acaccacgtc acagtcacga tgtctgcctt actggcttcc
3481 ccagggaagg aaaaatgtgc ttcctccctt ttttcaaggg ttcatctttg ctttaatttt
3541 ggcaaaatgt taagcattta ttttgagcta aaaataaaag ttaatttcat act
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