LOCUS AK164816 3287 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate heart cDNA, RIKEN full-length
enriched library, clone:D830041L12 product:unclassifiable, full
insert sequence.
ACCESSION AK164816
VERSION AK164816.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3287)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D830041L12
FEATURES Location/Qualifiers
source 1..3287
/clone="D830041L12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D830041L12"
/db_xref="MGI:3549983"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="heart"
misc_feature 1..3287
/note="putative"
/note="unclassifiable"
BASE COUNT 1001 a 551 c 619 g 1113 t
ORIGIN
1 gattcattgt ttccaaattc tccagtgcgg cctcagtgtg gtatagaata ataaaaagac
61 aaacaatttg agttgaaagt tatgcattat tagatggaat aacgggtgtc taagtactgt
121 agtatcttgt tgagacactc acgccttcaa actgccttcc agctgacttc actgtatgag
181 agcttaagtt tgcgcaacca gcacttagaa gaagaagtca aagatctagc agataagaag
241 gaatcagttg cccactggga agcccaaatc acagagataa ttcagtggtg agtgccctcc
301 agagtgctgt tgtgggggtg gggttgtggc cagggttgct gtgactgagt tcctgacaac
361 cttggtgtct tccgttgcca tggagataaa gttactttaa gcttgtaaaa atgggaaagt
421 aagcctttaa agaacgtcca tctgcttttg atattcccta agatcaaaac tccatattta
481 tggttatttt aagaaactga tagcctgaga aaaatgtaaa agatgagcaa taccgtgttt
541 gtaagtataa cacagcagtt cacatatggc atttttaaag tcttaaaaga ttggagctta
601 gattcacnna actattccct aatactctga ggactaattt gattatttgg cctataaatt
661 tgtcatttta tttactaaat gattgttacc atgcttataa aggtttccat ctattatact
721 acatggataa agaggaaccc agtgaagact ttatttctta ttaactttta tatttattta
781 aatctttacc cattttaacc tttatagtaa aatagctagt tcctttatgt attatctaca
841 aaccagttta ttacttagtg aggggtttta tttcctggaa tataatcagc tttatcagtt
901 tttggttttc ccttatccaa atttttaaaa cactttcgtt aaacccatta acccccaaat
961 aaggttttaa atgcttgaac cttaaaccgt ttagagtttt ctttgttttg aattaaactt
1021 taattccttt tggcttgaac caataatggt tgcccccaga ttttgttggg aaaattttaa
1081 ctttaatggt ttccccttga aaaacccaga aacccangtt tgggtttttg gttttgttta
1141 gttgttttaa tttccctaat tctaaccacc catttggaat ttgtaatttt ttaaaagggg
1201 gaaatttaat ttttaaaccc attttggccc caaggtttta ttaaatggag ctaaaccagt
1261 taataaagga agagctggaa aatggcatta taaggcggtg tttccaaagc ctttgagtcc
1321 caggccacca ctctatgttt accagtgacg aggacagtgg ggagtgatcc agatgaagga
1381 aggatttttt ttattcactt attcattcag taactcagtt gttcattttt aaagacctct
1441 tttcaccatg tgctcatggc tgacctcaaa ttcttggtct tcctgaagaa aaacgtagca
1501 gcatctgaac cctgcagtga agtaactgcc atctgaagat gccaaatact aagggttctg
1561 gagaagcata aatgaaatca acctagcttt gtcgtgaagc attatgctgt atttatttat
1621 tggcccgtaa ttcagtttga aataactaga aatttcaaca gtagaaaatt tcttgtttaa
1681 aagtgtgtat gtgtgtgagt agaggtaggc tggacatcaa ctttggattg gattgcttct
1741 tcggtcactg tacccttttt tttaagtata atttaacaaa tttttgtcta aatcatactg
1801 attcttatta acttcatgac cttaagataa taaataggaa ctggacttgg atttctttaa
1861 gctttaacgt taattctttc attattattt aattaatatt tctagaaaac agggatgctt
1921 cattataacc ctgatttctg cagaatatca tatttaaaat tttctaactt cagctttaaa
1981 taaaatatgt atgttttgtg agataaaata taagaatcta gataatgaga aatcttagta
2041 gtcttcaaaa agccttatgc ttgtccagtg tgagatctaa agggccatct tttgtggttc
2101 atggattatt tactgcttgt cagatgtaag taacctgggc ttccctaaac actgccagct
2161 tccatttgta cataactgga gtagttaaat aaatctgtgc ctacatcttg acaggtagcc
2221 gtcatagtgt ggccagtctt ttaaaaggag ttctttgagt atttaagttt ttggtcaact
2281 tggtttctta atgaagcttt aaattacata tgtcactgaa gttttcctgt gttttacttt
2341 gcactatgtc cacctttgtg tgtgtgtgtg tgtgtcctct agggtgagcg atgagaagga
2401 tgcacgaggc tatcttcagg ccttagcttc taaaatgact gaagagttgg aagcattaag
2461 aaattccagc ttggggacac gagcaacagt aagcaagctc tgccgtctca cacagagaca
2521 catctcttgc tggcagaaag cacatataca tctgacttct gtaaaagttc ttgtgagaaa
2581 atattttaga tctttataag aaaaatataa catattactg ttagctctta tgtatagcta
2641 cttattattg aaggaactga aaaggaaaaa acaattattt gttcatttat gcatatttac
2701 tgatatttct ggatttaatg aaaatgtatt ttcacaagtt gtgcatcagt tctactcagt
2761 tatcagtgat attgcttata aaatagctgc ttgattcact tgtattataa aatttaatct
2821 taagaataaa atagggaact aagacatagc catattattc tataggatat gccctggaaa
2881 atgcgtcgtt ttgcaaaact ggacatgtcg gctagactag agttgcagtc tgctctggat
2941 gcagaaataa gagctaagca ggccatccag gaagagctga ataaagtcaa agcatctaac
3001 atcttaacag aatggtaagg accaatcatc tagtcactac agtagtttat aaacttgttg
3061 atgttacgtg tttcgttgcc tgttaagggt tgttctttgt ttgttttttt aagcaaaaaa
3121 tgatgaccag aagactagga atacaattca gtagtataat gcttgcctgg catgcccaag
3181 gccaaacgtc tgccccacct ccctgacaaa agtgaggaac aggtttaggg agatagctgt
3241 cataaaagtg cttaccttat aagcataaaa gcctaaattt gagcccc
//