LOCUS AK164715 3232 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
library, clone:D630032B10 product:unclassifiable, full insert
sequence.
ACCESSION AK164715
VERSION AK164715.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3232)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D630032B10
FEATURES Location/Qualifiers
source 1..3232
/clone="D630032B10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D630032B10"
/db_xref="MGI:3549685"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="kidney"
misc_feature 1..3232
/note="putative"
/note="unclassifiable"
BASE COUNT 862 a 617 c 625 g 1128 t
ORIGIN
1 atttagtagt aaaatgttac cagtttgtaa ggcaacctaa ttatttgtaa acatttaaag
61 ttggagcaca gatctccact taacaaataa agcatagatc ctaactttat tttttttatt
121 attttatttt atttttggct tttttttttt tttttttttt ttttgagaca gggtttctct
181 gtatagccct ggctgtcctg gaactcaggc tgtcctcgaa ctgagagatc cgcctgcctg
241 cctcttcctc ccgagtgctg ggattaaaag cgtgcgccac cacgccaggc taagatccta
301 actttataaa tccaagaatg aagtgttcct tctctaggtt agcttaaagg tctccgtagc
361 atgtctattc taatccagcc ttattgcaca gattttcttc tttagccaca cagaataaga
421 caagccctgg gctcataata ttcttgaaaa ggtgtttaat gttgggtgct catcttttga
481 ggcatgtcag cttaacgttt taaaatcctc acatttcaaa tcctgcctct aactaccaca
541 ttatttttca agacagccta gactgtcctg gaactcactc tgtagaccag gcttgagtag
601 atctgcctgc ctctgccaac gggtggctgt gcacttccac agcccctgct cttttttaat
661 ctcagtttat tcttaggatt tcacagtgta tatatctcta ttgtagcttt cattcctgca
721 tcttatattg cgattatgaa taccttcttc tagaatgtaa tctggaggtc agaatgtaga
781 tcttccctgc ctattggggt ctgtctttcc tagtacactg ttttgaaagc acaaggaacg
841 gtggtgcatg cctataatca tagttggtgg caaatggtgg tggaaagccg aagtttaagg
901 ccaggagttc agaaatcctg tctgaatacc agaattcaac aaaaagtaaa gcagcgtgtg
961 gttgtttgga tcacaagtga aagactgcct acttgggacc agatacttat ttaatggcta
1021 ggtttagaat tttgttttta gtcagtagaa tctatttact ttgggactgt gcattttact
1081 tcataaactg gtttatggta ttttttttaa gtttcttagc cttataagtt ttgctcttca
1141 taatgaaata gtgatactta aaaaaataga agctgaatat tgagggattt aaaattatat
1201 cttaaaattt attgtggcca tacataatgg tacacacctt taatcctagc actcaaaaag
1261 cagaggcagg ggtatgtctt gagattttga gatcagtttg ttctacatag aaaatctcag
1321 tcttcctttt ttctaattgc aaattcttgg ccaattcagg ttggatttca ctccagcctg
1381 cctagccttt ccccgttttt ctagtcccag tctttcccca tttttgtaat tcgtgaatcc
1441 tgactgtgag ttcttttact gtattttacc cctttatatt aaacttagtc ttactgcctt
1501 tcaagtggac gttgaggctg ttactgaagc aacagatata ataaccttgt atagcatttc
1561 tgacagtgca ggagtgcatt aagctctgtt ttagggctga gcttcacttt tagctagggt
1621 tttgctgtac gtcactggct catctagacc ttaacatgta gaccaaactg gcatggaact
1681 ttctatctta ctcattttgt ctcccaaata ccaaggttat aggtctgcct tcatgtctag
1741 cctgaagagt ctgcctcttt ggaactcaga gtacatttaa caagatgggg gtcaaaaggc
1801 tagatttatt tttgatagtt aatatttaag accaaagtca gcttgtctcg cagaattctt
1861 attgtctgtc catcttcttc tgccccttct ccctcccctg tcctctctgc tttttatctc
1921 aatctttcag atagatgctt ttctatttaa ccagaatttt tggtcttatt tgatgtatat
1981 cagtgttttg tctgcatgct gcatgcctgg tgcctgtgga ggtgagaagg cattggagtt
2041 tttggaactg gagttatgtt ggtggttgtg agccaccatg tgggtgctga gaaccaaacc
2101 tgtgtcctcc ccaaaagcaa caaatattct taacgactga gctctctctc cattcctcct
2161 ttttggttca caacagaagt tgtgaagaga ttttagactt atgtgtattg gaaattaaag
2221 ataatttaga tttttttctg tccaataaaa gatggttttt ggagaatctg gacattatgg
2281 agttttcttc atttttacag aaaaattaac attatagggt tgaagataat agtttagtac
2341 tgagttcagt tcccagcaca aaaaggaaaa ggaatgtaat gtagaaaagg ggtaactcta
2401 aatgtggaca ttccccacgt ttacctgttt gtctgctgtt gttctctgaa ggttggacag
2461 taaggtgaat gacttggaca cagttttcac agaatgtggg aatacagaat atccttagct
2521 ttgtgaatac tttctaaagc tgcttgaaag gaatgttttc ttaggaaagc aaagtttcta
2581 agcacacatc ggacccatat gtgtgtgctt attctactgt tatttgcttt tgaatggggc
2641 tcgctctccc tcagattcat cttgattaga aatagtgaga tgtactgtgt aatagaacaa
2701 tcatcattat tttatttttt aaaaatattt acagtggcag tatgcaagac ttgacagctc
2761 aagtgactag tgatctcctg catttcccag aagtgactat tgaagctctt ggagaagatg
2821 agataacatt agagtccgtg cttcgtggaa agtttgctgc aggtaagtaa cattgttgaa
2881 gattcactaa tttgagacta gagctcaggc acttgctgcc tggttcagtc ctaggtttag
2941 cttaattgca ctacacatag atatgcatag tcatacatag atgcaggggc agcttagcag
3001 ttcagggcac ttgctgttta atcatgaaga ctggagctga gatgttcaac cattcacaaa
3061 cctataattt cagcttcaag agatctaatg ccctcttctg gcctccttag gcaatctcat
3121 atcctcatag agataaacac acccacactc aagtaaaata aatacttttt taaattacca
3181 atttggtttg caatgtatat acatattagt ttgttctaga tatatgttcc tt
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