LOCUS AK164404 2529 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
enriched library, clone:D230009A11 product:unclassifiable, full
insert sequence.
ACCESSION AK164404
VERSION AK164404.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2529)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D230009A11
FEATURES Location/Qualifiers
source 1..2529
/clone="D230009A11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D230009A11"
/db_xref="MGI:3548851"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="eyeball"
misc_feature 1..2529
/note="putative"
/note="unclassifiable"
BASE COUNT 592 a 551 c 491 g 895 t
ORIGIN
1 tctgcctccc gagtgctggg attaaaggca tgtgccacca cgcccgccga gtgtcttctt
61 agcctctggt tatagagatt tactgtaatc tttatatcat gtggcactgg aagtaatgta
121 ctgtgttgta ttaccaaata tagttgtctc atctttctca ttttttactt taatataata
181 ccaggtatat taaaagatgg cagtaaattt tgatgtttaa atatgttatg gctggaacac
241 tcatgttaaa aatgaaaaca tttctagagc tggagcaata gctcagtttt tccagaggaa
301 ctaagtttga tcccagttct tacatggccc cttcagctgt ctgtaactat agttccaggg
361 catccatacc tacttggcct cttggtgccc ctcacacaca gtgcatatgc atacattcag
421 gcaaagcaca tatacacatt taaaaaacaa tagaatcaac aaaatcccca gtgagacatt
481 ccttatgatt tgataggtaa gaaagctgac cttcagaggc attaagcaca ggttctagct
541 ggttaaaatg gatttctagt ttagttttga gacagggtct ctctgtgtag tcctggctat
601 ccttgaatgt tatgtatatc agggtttctt ctgtctccta tatgctggga atgaaggctt
661 acccaacaat gcctggctgt ttaaaataga tttttaaatt ccagtttctt tgatcagaat
721 atcccttttt tcgtaagatt tattttaact gtttgttttg tttttttaat ttaaaatctt
781 taatatattg tatcttgatc atgttttccc ctttctccag tttttcctag attctccctg
841 cctccttacc acctagcttt gtgttccttt tctctctccc tctcaaacat aaaatgaaaa
901 tcaaaacaaa caaaaagctc cacagagcaa ccttagagtt catttgtgtt tgctacctga
961 ctagtctcag tcatgggctt tctctggagt gtggttaacc tacccagtgg tattccattg
1021 gagggaactt ctccacaggc agaagacgtt ttctctttgc tagtagatac cattggctct
1081 tgttcacgcc cctttttagt ggtgggattt tgtccagttt gaacctgtgc aggtcttgtg
1141 cgtgctgcca tagtctgtga gttcacacgt gcttcagtgc tgctgtgtct ggaagacact
1201 gtttacttgg aggcatccgc tacctctggc tcttggcatc tttctgcctc ctctctactt
1261 agattgctga gccttgaggg agggatttgg ggaagacaat gcatttgaaa ctgagtgctc
1321 caaagtctct cccactgcac atgatggttt ctctgtattg attcccatgt gcaacaggaa
1381 ggagcttctc tgatgatggt acactgacct gaggggtttg cttcttcttt ctttcttaat
1441 tattcatatt agtgagtgtg actgtattag tgaatgccat gtgaatgttg gggcccaagg
1501 aggcaagaag agggcatcag ataccttgtg agatggagtt agaggtcatt gtgataggaa
1561 ccaaatctgt tcttgtgaga gcagcaagtt ctgttcagtg taaggcatct ctagctctca
1621 gcctttggac tcatagccaa tgttttacct taatatattg acttctttgg tatagtaatt
1681 tttcagatta tcagagaaag gacttcaaaa cattttttct ttctttctct ctctcttttt
1741 taaaattctc aggtacactg aaagctattc tgatgatgat tcgaacatgg aagattaccc
1801 agatccacag gtaagacaaa cattcaatga gcccactttg cttgcttgct tgcttgcttg
1861 cttgcttgct tccttccttc cttccttcct tccttccttc cttccttcct tccttcctct
1921 ctttctcttt ctctttctct ctctccctct ctttcttcct tccttccttt ctttctttct
1981 ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt ctactcattt
2041 tattcatata agaacactgt agctgtcttc agacacacca gaagaggaca tcagatccca
2101 ttatagatgg ttgtgaatca ccatgtgatt gttgggaatt aaactcagga cctgtggaag
2161 aacagtcagt gctcttaacc gctgagccat ctctccagcc ctgatttctt tcttttttta
2221 aagatttatt tatttttatt ttatgtgtat gactatttta tctgcatgta tatatgtgca
2281 tcagatgcac acctggtgcc tgaggtcaga agaggatgta cccttatact ggcgttagga
2341 gctactgtgt gggtcctagg aactgaactt tggttttctt caagagtagc cagtgtagcc
2401 gggagtggtg gcacacgcct ttaatccagc actggggagg cagaggcagg cgggtttctg
2461 agttcaaggc cagcctggtc tacaaagtga gttccagggc tacacagaga aaccctgtct
2521 caaaaaacc
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