LOCUS AK163093 1250 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male aorta and vein cDNA, RIKEN full-length
enriched library, clone:A530059A07 product:hypothetical protein,
full insert sequence.
ACCESSION AK163093
VERSION AK163093.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1250)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A530059A07
FEATURES Location/Qualifiers
source 1..1250
/clone="A530059A07"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A530059A07"
/db_xref="MGI:3543137"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="aorta and vein"
CDS 14..>1250
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAE37191.1"
/transl_table=1
/translation="MVGTIPTDDDQATTVRGEDLSDAAIISTSTAECVLTCTSLSRHE
ENQQATHNPEGNGGHLATKQSKCELPMPSLVAERNCKCPGPFRMGKGVGPLMAVGTRG
EHDRLPVCEPSVGQGQPGTALCLGEEESHGMDCPGQDLNAKERNTLLSSVQRESKSAE
AEAAGDSSTARRTVRKDSERNANSLSETNCLREPEQKPAEDTSGSTHCLTAVNPGAEA
DGMLPITHAALEYPDHQEPESNLKTTTKCITGQESQMPSSHTGVLSAVCHVAPCASEQ
EGGLPTKSDHSGTWTSEGSPEKMGHVAGARQSFHREGNLDVTLPPEDNGCGVVLLGSE
ESPPKGIGGLELSTGLTTEISVSSEEDTSHGVVAAPENPCVGRRRGAAELQMEALLMR
ESLNVEKSESRINEEIHFES"
BASE COUNT 370 a 269 c 357 g 254 t
ORIGIN
1 acgcgaagct gtcatggttg gtactatccc tacagatgat gaccaggcca ccactgtgag
61 aggggaagat ttgagtgatg ctgccattat ttccaccagc acagcagagt gtgtgttgac
121 gtgcactagc ctaagcaggc atgaagagaa tcagcaagcc acgcacaacc cagaaggaaa
181 tggtggacat ttagctacaa agcaaagtaa gtgtgaatta cccatgccca gcctcgtggc
241 tgagcgtaat tgtaagtgcc ctgggccatt caggatgggc aaaggagtag gtcctttaat
301 ggcagtaggc accagggggg agcatgacag gctgccagtc tgtgagccct cagtgggaca
361 aggccagcca ggcactgctt tgtgcttagg agaggaagaa agtcatggca tggactgccc
421 tggtcaagac ctcaatgcaa aagaaagaaa tacattgctg agctctgttc agagggagag
481 caaaagtgca gaggcagagg cagcagggga cagtagcaca gccaggagaa cagtgagaaa
541 ggactcagag aggaatgcca actcactgtc tgagacaaac tgtctgagag aaccagaaca
601 gaagcctgct gaggacacct ctggcagtac tcactgtctg acagcagtaa atcctggtgc
661 tgaagctgat ggcatgctgc ccatcacaca tgctgcattg gagtatcctg accaccagga
721 acctgagagc aacttgaaaa ctaccaccaa atgtattaca ggccaagagt cacaaatgcc
781 ttcttcccac acaggagtcc tttcagctgt ctgccatgta gctccatgtg cttcagaaca
841 ggaggggggc ttgcctacaa aaagtgacca cagtggcacg tggactagtg aagggtcgcc
901 tgagaaaatg ggacatgttg ctggtgcaag gcagtcattc cacagggaag gaaaccttga
961 tgtcactctt cctcctgagg ataatgggtg tggtgtagtt ttattaggca gtgaagagtc
1021 accaccaaag ggtataggag gattggaact gtcgactggc ttaacaactg agatatctgt
1081 gagttcagag gaagatacaa gtcatggagt tgtagcggca cccgagaacc cgtgtgttgg
1141 aaggcggaga ggggcagctg aactacagat ggaagcttta ttgatgaggg aatcactaaa
1201 tgttgaaaaa tcagagtcaa gaatcaatga agaaattcac tttgaatctc
//