LOCUS AK162201 1899 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
enriched library, clone:7420452M24 product:similar to DEGENERATIVE
spermatocyte homolog (MDES protein) (DROSOPHILA) [Mus musculus],
full insert sequence.
ACCESSION AK162201
VERSION AK162201.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1899)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=7420452M24
FEATURES Location/Qualifiers
source 1..1899
/clone="7420452M24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:7420452M24"
/db_xref="MGI:3538924"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="in vitro fertilized eggs"
CDS 84..1046
/codon_start=1
/note="putative"
/note="similar to DEGENERATIVE spermatocyte homolog (MDES
protein) (DROSOPHILA) [Mus musculus] (UniProt|O09005,
evidence: FASTY, 72.8%ID, 100%length, match=972)"
/protein_id="BAE36788.1"
/transl_table=1
/translation="MRKLASLEDAEWVYNDRLHNDRRREILAKYPEIKSLMKPDPNLI
WIITIIILIQLALLYLVKDLEWKWVIFCAYVFGGSINHSLIIASHEISHNFPFGHRKA
LWNRWFGIFANLPIGIPCSISFKKYHTDHHRFLGVDGVDVGVPHYLEGWFFCTAYRKL
VWIAFQPLFITFRLLFINRKPISYLEIINTVVQITFDIIVYYVFGVKSLVYMLVASML
GLGLHPISGNLIGDHYMFLKDQETFSYYGPLNLLTFNVGYHNEHHDFPNIPGKDLPLV
RKIAAEYYDKLPHHISWIKVLYDFVMDNTISSYSRMKKRLPKRK"
BASE COUNT 542 a 389 c 390 g 578 t
ORIGIN
1 ggcaggccac agctgctatt gatcctgtca ccctctcgga gttgcacctg gagcagatcc
61 tagggcaggt gtgcacacca gccatgagga aactcgcatc actggaagat gctgagtggg
121 tgtacaatga tcggctgcat aatgatcgac gtcgggagat attggcaaaa tatccagaga
181 taaaatcttt gatgaaaccg gaccctaacc tgatctggat cataaccata ataattctta
241 tccagctggc tttgttgtac ttagtcaaag acttggagtg gaaatgggtc atattttgtg
301 cctatgtatt tggtggttct attaaccact cactaattat agcttctcat gagatctctc
361 ataatttccc ctttggccac cgcaaagcac tgtggaaccg ctggtttgga atatttgcta
421 acctcccgat tgggattcca tgctcgattt cctttaagaa ataccacacg gaccaccatc
481 gattccttgg agttgatggt gtcgacgtag gtgttcctca ctatctcgag ggctggttct
541 tctgcaccgc ttacaggaag cttgtctgga ttgcttttca acctctcttt attacttttc
601 gacttctatt tatcaaccgc aaaccaattt cttatctgga aatcatcaat actgttgttc
661 agatcacctt tgacattata gtttactatg tctttggggt taaatcctta gtctacatgc
721 tggtagcctc catgcttggt ctgggtttgc acccaataag tggcaatctt ataggggacc
781 attacatgtt cttaaaggac caggaaacat tctcctatta tgggcctctg aacttgctca
841 ccttcaatgt gggctatcac aacgagcacc atgacttccc caacattcct ggaaaagacc
901 ttcccttggt gaggaaaata gcagctgaat actatgacaa actcccccat cacatctcct
961 ggatcaaagt actgtatgat tttgtgatgg ataacacaat aagttcctat tcacggatga
1021 agaagaggct tccaaaaagg aaatagcttt tagagcaagc actgtcagag tcaaagcaaa
1081 gtctgcaaag atttttaatt gctgataatg tggatttttt tttcttgtta aaattaagag
1141 ctgttagaag ccatctagga aaggctatgg caagcaagtg agttttctgg tgatgaccca
1201 ctgttttgca gggctgtaac agatgtactc tgagatgcaa ggtcctcaga catttcatcc
1261 caggattgct tcttgctacc aatatgcctt tcctgccact cttacatagc ctaatgattc
1321 ctgggcatct gccaactata ttgggacgat ttcctgcaga atcaatatga agatggtact
1381 ttcatgtagt tatgctgtgt agatgaactg atgacttcat atttctgttt atagaactcc
1441 taaattgata taggtactct caagccccct atagaacaaa cgctgcaaat agagctctgt
1501 aaaccttcat gtgtcatggg ataattgcat tagataaaga aaccaggctt ggatcaaatt
1561 ccttctaggt cagaaatgaa gccactatct ggtaactagg ggccataaac tgggaatggg
1621 aaattgattg taggtgaaag gacaaaacat aaatgatgga ctaaaaccag tcttagccaa
1681 gatttcaaaa tagtaagaca caaggcagat gatttgtctc ttgacaaatt ctgtgctaac
1741 ttatgacata aaaattattg ctttaaactt ttaatgagct tatggatcta gcaatagtag
1801 ataatggatg tttagtcagg tactagccta atggaaagac atgtaaatga ttctgttgta
1861 attccttaag ccttattgct ctatgaattt atggaatgt
//