LOCUS AK162174 1292 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
enriched library, clone:7420445H18 product:weakly similar to Ndr
Ser/Thr kinase-like protein (Fragment) [Homo sapiens], full insert
sequence.
ACCESSION AK162174
VERSION AK162174.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1292)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=7420445H18
FEATURES Location/Qualifiers
source 1..1292
/clone="7420445H18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:7420445H18"
/db_xref="MGI:3538831"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="in vitro fertilized eggs"
CDS 127..558
/codon_start=1
/note="putative"
/note="weakly similar to Ndr Ser/Thr kinase-like protein
(Fragment) [Homo sapiens] (UniProt|Q9UPD3, evidence:
FASTY, 50%ID, 60.7%length, match=354)"
/protein_id="BAE36772.1"
/transl_table=1
/translation="MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM
LKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFED
RLPEEMARFYLAEMVIAIDSVHQLHYVHRFSETVVLNTGPS"
regulatory 1274..1279
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1292
/note="putative"
BASE COUNT 406 a 201 c 251 g 434 t
ORIGIN
1 taagccagcc agtaaggcat ccctctgtgg cctctgcttc agttcctgtt tcaccttcct
61 gcagtaatgg actgtgagca ggactgtcag ctgtaagcta aaccatttac ttctaaagtg
121 aagcaaatgc gattacatag agaagacttt gaaatattaa aggtgattgg tcgaggagct
181 tttggggagg ttgctgtagt taaactaaaa aatgcagata aagtattcgc catgaaaatt
241 ctgaacaagt gggaaatgct gaaaagagct gagacagcgt gctttcgtga agagagggat
301 gtgttggtaa atggagacag taagtggata accactctgc actatgcttt ccaggatgac
361 aataacttat acctggttat ggattattat gttggtgggg atttacttac tctgctcagc
421 aaatttgaag atagattgcc tgaagagatg gctcggtttt acttggctga gatggtgata
481 gccattgact cagttcacca gctccactat gttcacaggt tctcagagac agtagtgctt
541 aacactggcc cttcataagg agactttgtt agaaaatatt gtcagattta gcttctcttc
601 tcttctcttc tcttctcttc tcttctcttc tcttctcttc tcaatcctgt tattggggat
661 agagctaggc tctgggcatg ttgggtaaac aaatgttcca ccactgaggt acagcaccag
721 gcagcagatt tcatacaaaa agataatagt agaaagtaga tagtatttta aaattgtgaa
781 ttagtgtaaa gttggtaaca tgagattttc agagacaacc atttcttttc tttaaatctt
841 aaaaaaaaat tgttttcatg aagttaggat gaggatggtg agtatgaata tggaagaggc
901 acagggtgta tgaccgaaat atattatatg gaactcgcaa ataattaata catatatttt
961 aaagttttat taaaaaggtt gcttagctga aatatttgcc catatagaaa aataataata
1021 gaatactaat tattaaaaat aaggagttac ttcattttaa atcttcacag atagttttta
1081 aaaaatctaa aattatacat ttctcactat taactttatt tgatacatca gttattattc
1141 ttggtaataa acactttatg tttttagttc ataagactta tattttcaga tttttgccac
1201 ctgaggaaag atgttcatct ttttgtataa actgccatta cgtattccat taatgtttat
1261 ttaaaattat gagattaaat tgtaagctct tc
//