LOCUS AK162040 883 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820426J24 product:H3 histone, family 3A, full insert sequence. ACCESSION AK162040 VERSION AK162040.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 883) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6820426J24 FEATURES Location/Qualifiers source 1..883 /clone="6820426J24" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6820426J24" /db_xref="MGI:3537468" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="mullerian duct includes surrounding region" CDS 115..525 /codon_start=1 /note="H3 histone, family 3A (MGD|MGI:1097686 GB|NM_008210, evidence: BLASTN, 100%, match=882)" /note="putative" /protein_id="BAE36694.1" /transl_table=1 /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" BASE COUNT 244 a 202 c 200 g 237 t ORIGIN 1 tattgtgttc gcagccttcg ccgcgccgct gccgctctcc aacgccagcg ccgcctctcg 61 cttgccgagc tccagccgaa ggagaagggg ggtaagtaag gaggtgtcct taccatggct 121 cgtacaaagc agactgcccg caaatccacc ggtggtaaag cacccaggaa acaactggct 181 acaaaagccg ctcgcaagag tgcgccctct actggagggg tgaagaaacc tcatcgttac 241 aggcctggta ctgtggccct ccgtgaaatc agacgctatc agaagtccac tgaacttctg 301 atccgcaagc tcccctttca gcgtctggtg cgagaaattg ctcaggactt caaaacagat 361 ctgcgcttcc agagtgcagc tattggtgct ttgcaggagg caagtgaggc ctatctggtt 421 ggcctttttg aagataccaa tctgtgtgct atccatgcca aacgtgtaac aattatgcca 481 aaagatatcc agctagcacg ccgcatacgc ggagaacgtg cttaagagtc cactatgagg 541 ggaaacattt cattctcaaa aaaatttttt ttcctcttct tcctgttatc agtagttctg 601 aatgttagat attttttcca tggggtcaaa ggtacctaag tatatgattg cgagtggaaa 661 cataggggac agaatcaggt attggcgttt ctccacgttc atttgtgtgt gaatttttaa 721 tataaatgca agatggaaag cattaatgca agcaaaatgt ttcagtgaac acatttcaac 781 agttcaactt tataacaatt ataaataaac ctgttaaaat tttctggaca atgccagcat 841 ttggattttt ttaaaataag taaatttctt attgacggca act //