LOCUS AK160893 2661 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo embryonic body below diaphragm region
cDNA, RIKEN full-length enriched library, clone:3732418H08
product:hypothetical protein, full insert sequence.
ACCESSION AK160893
VERSION AK160893.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2661)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=3732418H08
FEATURES Location/Qualifiers
source 1..2661
/clone="3732418H08"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:3732418H08"
/db_xref="MGI:3532909"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="embryonic body below diaphragm region"
misc_feature 1..2661
/note="hypothetical protein (evidence: CDS)"
/note="putative"
BASE COUNT 667 a 536 c 732 g 726 t
ORIGIN
1 ggtcgcctag tgcctgtcgc agtccagagg ttccgtcacc agacgaaatg gcggaggctg
61 cggtggtggc gtgggttcgc ggccccggta ccgtgtggaa ggcgctgccg tgtgcctcgg
121 ttgggtgctc cgtgcgcgat gtgatctacc gacactgcca ggaacaggaa gttcccgtgg
181 aatgcttctt tgtgacgtgc aatggagtcc tcgttaatgc cggtgataag gtgcagcatg
241 gagccgtgta cagtttggag cccaggcttc gtggggggaa aggaggtttt gggtctatgc
301 ttcgagcact tggtgcacag atagagaaga caaccaatag agaagcctgc cgggatctca
361 gtgggaggag attacgagat gtcaatcatg agaaagcgat ggctgagtgg gtaaaacagc
421 aagctgagcg agaggctgaa aaggagcaaa ggcgcctgga gaggctgcag cgaaagcttg
481 ccgagcctgc acactgcttc accagtcgac taccagaggc agtgccatga gatggctgag
541 cgtctggagg actcagtcct caaaggtatg caggctgcat ccagcaagat ggtatcagca
601 gaaatcactg agactcggaa acggcctaac aagtcaaaaa cggaccagga aactagtgca
661 aaaaaaagga aaaggaaatg cttttggttg ggcatgggtg ggctggaggc tgccgagggg
721 tccagtactg gaagctcaga ggacagctca gaggatgaca gtgaggatgc tcctgggact
781 tcggagcaga gctgctgtgc tcgggaagac ggcattgatg ctgtagaggt ggcagccgac
841 cgacctggca gtcctcggag ctcggcctct ggtacacact ctgagtcacc tgaaaagctt
901 cagtgccccg tgaccgagcc tgggcagggc attttggaga acacaggaac tgagccagga
961 gagacctctg acaaggagtg caacgagagg aagacagtca cagacccaga ggagacgcca
1021 gcaaggaagg aaacagagag tcatgaggcc acagaaaagg accaaaagac aggaatgtct
1081 ggtggggaca gagctgccat ggttttgtct ggagaagaca ggaaaagtgt ccctgctgct
1141 aatctggagg gaaacaactc aggagacaca gctcttggtc tggaagcggt ggatctgtca
1201 gcattcagct ctgcagccga gttggagtcg ctgggtttgg agaggctcaa gtgtgaactg
1261 atggtccttg gactgaagtg tggggggacc ctgcaggagt gcgcagccag gctcttctct
1321 gtcagaggcc tcacaaagga actcattgac ccagctttat ttgccaagcc ttccaagggg
1381 aagaagaagt gaatttcctt ggcacacttc ctccgctgtg acagacttgt ggcctgtgtt
1441 ccttttgata ctaaaagcca attttttaat aattcggttc taactagtct cttttcaaac
1501 tagtctcttt tcagtggtac ctgaacttga ggttttcgtt ggaggagaaa acttttgtat
1561 gttatttttc tttgtttttg atgtttttgt aagagatact ctgtagccca gactgaccaa
1621 gaactgtgtg gttcactttg gtctcaaact tgcagtgatc ctcctgtctc gcatgagctg
1681 ctgtgcctgc tttgtcagag gtttatacat ttctttggct ttatatactg tgtcacttga
1741 gtaagatatt ttcaagaaat ttatttgtat aacccaaagc agtcaggttt gtagacacag
1801 atattcataa cattcatttt aaaaacttgt ttctctttct aggagagaga aagagagaga
1861 atgagaatat gaatgtgtgt gtgtgtgtgt gtgtgtgaga ccagggatgg agcctagctg
1921 cttccaggcc tctcactggg gatttttatt ctagctaggg acctattttg tttggttttc
1981 aaagaatcag ttttttgtct ttgtggattt ttctcagttg ttgatctcat tggcatttga
2041 attgtatttc ctctcctaca tgccttgtgt ttatcatttt tctttagctc cttaagtctt
2101 tgatcactga ttatagattt tatttttatt attattagtg tattgcccaa ttagcaaatg
2161 tttgtgtttt ctgtaaatgt tttattgata gtgactctct gactattcag gacagaaagt
2221 acctggcatc cttgttgtga ctgacccagg atagggtctg acatgatctg tgctgtgtgt
2281 gttggaaaga acgtaccatc agccggcagc agggtgggtt ctggacacct atcatgtgag
2341 tggttggtcg gatcggtcag atgaccgcct tcgctggttc attttcataa ggaactaaga
2401 gcaaaatcaa atctcaatta ggattgtggc aattgccttt tttgagatta aaaataactt
2461 catcagcgtt tgctaagttg tcagttgtat attaattcag tgactttata tgtctggctc
2521 tgggctggag agaccgcact gactgctctt ccaaaggtcc tgagttcagt tcccagcaac
2581 cacataatgg ctcataacca tcagtacagc tacagtgtac tcatatacta tacataaaat
2641 aaataagtaa ataaatcttt t
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