LOCUS AK159433 3624 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
library, clone:I420019P03 product:ADP-ribosyltransferase (NAD+;
poly (ADP-ribose) polymerase) 1, full insert sequence.
ACCESSION AK159433
VERSION AK159433.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3624)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Takashi Ishikawa ( Department of Surgery
2 Yokohama City University 3-9 Fukuura,Kanazawa-ku,Yokohama
236-0004 Japan ) whose assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I420019P03
FEATURES Location/Qualifiers
source 1..3624
/cell_type="osteoclast-like cell"
/clone="I420019P03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I420019P03"
/db_xref="MGI:3565030"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 112..3156
/codon_start=1
/note="ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
polymerase) 1 (MGD|MGI:1340806 GB|AK088679, evidence:
BLASTN, 99%, match=3574)"
/note="putative"
/protein_id="BAE35080.1"
/transl_table=1
/translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF
DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS
GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP
TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE
VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG
ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW
VTPKEFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTTVNSSAPADKPLS
NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA
NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVAPKGKSAAPSKKSK
GAVKEEVVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT
NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN
AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM
KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI
PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK
TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN
RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD
PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG
TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW"
regulatory 3604..3609
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3624
/note="putative"
BASE COUNT 969 a 893 c 1044 g 718 t
ORIGIN
1 gagtagtcta tcctgagcgg aggcggctct gcacgcttgc gggggaaacc gacacgttag
61 cggagcgcac cagcggcggc gtcgggctgc cgctgcagca cgagaaggag gatggcggag
121 gcctcggaga ggctttatcg agtggagtac gcgaagagcg ggcgcgcctc ttgcaagaaa
181 tgcagcgaga gtattcccaa ggactccctc cgcatggcca tcatggtgca gtcacccatg
241 ttcgatggga aagtcccaca ctggtaccac ttctcctgct tctggaaggt gggccactcc
301 atccggcagc ctgatgttga ggtggatggc ttctctgagc tgcgctggga tgatcagcag
361 aaggtcaaga agacggccga ggctggaggc gtggcaggca aaggccagga tggaagtggc
421 ggcaaggcgg agaagacatt gggtgacttt ttagcggagt acgccaagtc caacaggagc
481 atgtgcaagg gctgcctgga gaagatagag aagggccaga tgcgcctgtc caagaagatg
541 gtggatccag agaagccaca gctgggtatg attgaccgct ggtaccatcc aacttgcttt
601 gtcaagaagc gggacgagct gggcttccgg cctgagtaca gtgccagtca gctcaagggc
661 tttagcctcc tctctgcaga agacaaagaa gctctgaaga agcagctccc ggccatcaag
721 aatgaaggaa agagaaaagg tgacgaggtg gatggaacag atgaagtggc caaaaagaaa
781 tctaagaaag ggaaggacaa ggatagtagt aagctggaga aggccctcaa ggctcagaat
841 gagctgatct ggaatatcaa agacgagctg aagaaagcgt gttccaccaa cgacctgaag
901 gagctgctca tcttcaacca gcagcaggtg ccgtcaggag agtcagcgat cttggacaga
961 gttgctgacg gcatggcgtt tggggccctt ctgccctgca aggagtgttc aggccagctg
1021 gtctttaaga gcgacgctta ttactgtact ggggatgtca ctgcctggac caagtgcatg
1081 gtcaagacac agaatcctag ccgaaaggaa tgggtaactc caaaggaatt ccgagaaata
1141 tcctacctca agaagttaaa ggtcaaaaaa caggaccgaa tattccctcc agaaagcagc
1201 gccccagcac cactggcact gcccctctct gtcacctcag cacccacaac tgtgaactcc
1261 tctgctccag cagacaagcc cctgtctaac atgaagatcc tgactcttgg gaagctctcc
1321 cagaacaagg acgaagcaaa agctgtgatt gagaaactcg gaggcaagtt gacaggatct
1381 gccaacaagg cctccttgtg tatcagcact aaaaaggagg tggagaagat gagtaagaag
1441 atggaggaag tgaaagcggc caacgttcga gttgtgtgtg aggacttcct ccaggacgtg
1501 tctgcctcca ctaaaagcct ccaagagctg ctctcggccc acagcttgtc ctcgtggggg
1561 gctgaggtga aggcagagcc tggtgaagtg gtggccccca aggggaagtc agctgcaccc
1621 tccaagaaga gcaagggtgc tgtcaaggag gaagttgtca acaaatctga aaagaggatg
1681 aaattaactc tgaagggagg agcagccgtt gatcctgact ctggtctgga acactctgca
1741 cacgtcctgg agaaaggtgg gaaggtgttc agcgccacac ttggcctggt ggacattgtg
1801 aaagggacga actcctatta caaactgcag cttctggagg acgacaagga gagcaggtac
1861 tggatcttcc ggtcctgggg ccgggtgggc acagttatcg gcagtaacaa acttgagcag
1921 atgccctcca aagaggacgc tgttgagcac ttcatgaagc tgtatgaaga gaagactggg
1981 aatgcctggc actcgaaaaa cttcacaaag tatcccaaga agttctaccc tctggagatt
2041 gactatggcc aggacgaaga ggcagtaaag aagctgacgg tgaagcctgg caccaagtcg
2101 aagctgccga agccagtgca ggagctcgtg gggatgatct tcgacgtgga gagcatgaaa
2161 aaggccttgg tggagtacga gattgacctc cagaagatgc ccttggggaa gctgagcaga
2221 aggcagatcc aggccgccta ctctatcctc agcgaggtcc agcaggcagt gtctcaaggc
2281 agcagtgaat cccagatcct agatctctcc aatcgcttct acactctgat cccccatgac
2341 tttggaatga agaagccccc actcctgaac aacgcagaca gcgtgcaggc caaggtggag
2401 atgctagaca acctcctgga catcgaggtg gcctatagtc ttctcagggg tggctctgac
2461 gacagcagca aggatcccat cgacgtcaac tacgagaaac tcaaaactga cattaaggtg
2521 gttgacagag attctgaaga ggccgaggtc atcaggaagt acgtgaagaa cactcatgct
2581 accacgcaca acgcctatga cctggaagtg atcgatatct tcaagataga gcgcgagggg
2641 gagagccagc gctacaagcc cttcaggcag cttcacaacc ggaggctgct gtggcacggc
2701 tccaggacca ccaactttgc tggcatcctg tcgcagggtc tgcggatagc cccacctgaa
2761 gcgcctgtga caggctacat gtttgggaaa gggatctact ttgccgacat ggtgtccaaa
2821 agtgcaaact actgccacac atctcaggga gacccgattg gcttaatact gctgggagag
2881 gttgcccttg gaaacatgta tgaactcaag catgcttcac atatcagcaa gttacccaag
2941 ggcaagcaca gtgtcaaagg tttgggaaaa accacccctg acccttcggc cagcatcacc
3001 ctggagggtg tagaggttcc actgggaaca gggatcccat ctggtgtcaa cgacacctgc
3061 ctgctgtata atgagtacat tgtctacgac attgctcagg tgaatctcaa atacctgctg
3121 aaactcaagt tcaattttaa gacatccctg tggtaaagtg cgaggggtgg gctgtgccca
3181 gcacccaggg cctagggggc aattctccct agtgcctctg caccagacac cacaaaacct
3241 cagccatgct gccgccgaag ggtggccccc tcaccgaatc tccttaggaa gggttttata
3301 cagacaggtt aaagggctct ggtttcaagt cccttgtcca tgctgcactg gggcaggccg
3361 gttgtttgtg gtttgtccta ccagccacag ctccatagac agcagctggc agtagagcaa
3421 aagttgggga gaggattttg ttgtttgcct agactagtcc tgagggaaga aacaccacgt
3481 cacagtcacg atgtctgcct tactggcttc cccagggaag gaaaaatgtg cttcctccct
3541 tttttcaagg gttcatcttt gctttaattt tggcaaaatg ttaagcattt attttgagct
3601 aaaaataaaa gttaatttca tact
//