LOCUS AK157347 2096 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched
library, clone:F830212B19 product:interferon regulatory factor 1,
full insert sequence.
ACCESSION AK157347
VERSION AK157347.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2096)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F830212B19
FEATURES Location/Qualifiers
source 1..2096
/clone="F830212B19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F830212B19"
/db_xref="MGI:3558572"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="activated spleen"
CDS 234..1223
/codon_start=1
/note="interferon regulatory factor 1 (MGD|MGI:96590
GB|NM_008390, evidence: BLASTN, 100%, match=2067)"
/note="putative"
/protein_id="BAE34056.1"
/transl_table=1
/translation="MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKG
SSAVRVYRMLPPLTRNQRKERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDD
HSSYTTQGYLGQDLDMERDITPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPM
PSTSEAATDEDEEGKIAEDLMKLFEQSEWQPTHIDGKGYLLNEPGTQLSSVYGDFSCK
EEPEIDSPRGDIGIGIQHVFTEMKNMDSIMWMDSLLGNSVRLPPSIQAIPCAP"
BASE COUNT 529 a 544 c 564 g 459 t
ORIGIN
1 gggtgcgcac cactccttcg tcgaggtagg acgtgctttc acagtctaag ccgaaccgaa
61 ccgaaccgaa ccgaaccgaa ccgggccgag ttgcgccgag gtcagccgag gtggccagag
121 gaccccagca tctcgggcat ctttcgcttc gtgcgcgcat cgcgtaccta caccgcaact
181 ccgtgcctcg ctctccggca ccctctgcga atcgctcctg cagcaaagcc accatgccaa
241 tcactcgaat gcggatgaga ccctggctag agatgcagat taattccaac caaatcccag
301 ggctgatctg gatcaataaa gaagagatga tcttccagat tccatggaag cacgctgcta
361 agcacggctg ggacatcaac aaggatgcct gtctgttccg gagctgggcc attcacacag
421 gccgatacaa agcaggagaa aaagagccag atcccaagac atggaaggca aacttccgtt
481 gtgccatgaa ctccctgcca gacatcgagg aagtgaagga tcagagtagg aacaagggca
541 gctctgctgt gcgggtgtac cggatgctgc cacccctcac caggaaccag aggaaagaga
601 gaaagtccaa gtccagccga gacactaaga gcaaaaccaa gaggaagctg tgtggagatg
661 ttagcccgga cactttctct gatggactca gcagctctac cctacctgat gaccacagca
721 gttacaccac tcagggctac ctgggtcagg acttggatat ggaaagggac ataactccag
781 cactgtcacc gtgtgtcgtc agcagcagtc tctctgagtg gcatatgcag atggacatta
841 taccagatag caccactgat ctgtataacc tacaggtgtc acccatgcct tccacctccg
901 aagccgcaac agacgaggat gaggaaggga agatagccga agaccttatg aagctctttg
961 aacagtctga gtggcagccg acacacatcg atggcaaggg atacttgctc aatgagccag
1021 ggacccagct ctcttctgtc tatggagact tcagctgcaa agaggaacca gagattgaca
1081 gccctcgagg ggacattggg ataggcatac aacatgtctt cacggagatg aagaatatgg
1141 actccatcat gtggatggac agcctgctgg gcaactctgt gaggctgccg ccctctattc
1201 aggccattcc ttgtgcacca tagtttgggt ctctgacccg ttcttgccct cctgagtgag
1261 ttaggccttg gcatcatggt ggctgtgata caaaaaaagc tagactcctg tgggcccctt
1321 gacacatggc aaagcatagt cccactgcaa acaggggacc atcctccttg ggtcagtggg
1381 ctctcagggc ttaggaggca gagtctgagt tttcttgtga ggtgaagctg gccctgactc
1441 ctaggaagat ggattggggg gtctgaggtg taaggcagag gccatggaca ggagtcatct
1501 tctagctttt taaaagcctt gttgcataga gagggtctta tcgctgggct ggccctgagg
1561 ggaatagacc agcgcccaca gaagagcata gcactggccc tagagctggc tctgtactag
1621 gagacaattg cactaaatga gtcctattcc caaagaactg ctgcccttcc caaccgagcc
1681 ctgggatggt tcccaagcca gtgaaatgtg aagggaaaaa aaatggggtc ctgtgaaggt
1741 tggctccctt agcctcagag ggaatctgcc tcactacctg ctccagctgt ggggctcagg
1801 aaaaaaaaat ggcactttct ctgtggactt tgccacattt ctgatcagag gtgtacacta
1861 acatttctcc ccagtctagg cctttgcatt tatttatata gtgccttgcc tggtgcctgc
1921 tgtctcctca ggccttggca gtcctcagca ggcccaggga aaaggggggt tgtgagcgcc
1981 ttggcgtgac tcttgactat ctattagaaa cgccacctaa ctgctaaatg gtgtttggtc
2041 atgtggtgga cctgtgtaaa tatgtatatt tgtcttttta taaaaattta agttgc
//