LOCUS AK154119 1938 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630003C09 product:presenilin 2, full insert sequence. ACCESSION AK154119 VERSION AK154119.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1938) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F630003C09 FEATURES Location/Qualifiers source 1..1938 /cell_type="NOD-derived CD11c +ve dendritic cells" /clone="F630003C09" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F630003C09" /db_xref="MGI:3552721" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" CDS 27..1373 /codon_start=1 /note="presenilin 2 (MGD|MGI:109284 GB|NM_011183, evidence: BLASTN, 99%, match=1915)" /note="putative" /protein_id="BAE32386.1" /transl_table=1 /translation="MLAFMASDSEEEVCDERTSLMSAESPTSRSCQEGRPGPEDGEST AQWRTQESEEDCEEDPDRYACSGAPGRPSGLEEELTLKYGAKHVIMLFVPVTLCMIVV VATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLY KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWNFGAVGMVC IHWKGPLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRM LVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFGEP SYPEAFEAPLPGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGNGDWNTTLACF IAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI" regulatory 1918..1923 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1938 /note="putative" BASE COUNT 415 a 527 c 550 g 446 t ORIGIN 1 gaccccgcgc cgcggcggag cagaccatgc tcgcattcat ggcctctgac agcgaggaag 61 aggtgtgtga tgagcggacg tccttgatgt cagccgagag ccccacatct cgctcctgcc 121 aggaaggcag gccaggcccg gaggatggag agagcactgc ccagtggagg actcaggaga 181 gcgaagaaga ctgtgaagag gacccggacc gctacgcatg cagtggggct cctgggcgac 241 cgtcgggcct ggaggaagag ctgaccctca agtatggggc gaagcatgtg atcatgctat 301 tcgtgcctgt cacgctgtgt atgatcgtgg tggtggccac tatcaagtct gtgcgtttct 361 acactgagaa gaacgggcag ctcatctaca cgcccttcac ggaggacacg ccctcggtgg 421 gccagcggct cctcaactcc gtgcttaaca ccctcatcat gatcagcgtc atcgtagtca 481 tgaccatctt cctcgtggta ctctacaagt atcgatgcta caagttcatc catggctggc 541 tgatcatgtc ctccctgatg ctcctcttct tgttcaccta catctacctc ggggaagtgc 601 tcaagaccta caatgtggcc atggactatc ccacactctt cctggctgtc tggaacttcg 661 gggcagtggg catggtgtgc atccactgga aggggcctct ggtgctgcag caggcttacc 721 ttattgtgat cagcgcactc atggccctgg tgttcatcaa gtacctgccg gagtggtctg 781 cctgggtcat cttgggtgcc atctctgtgt acgatctcgt ggccgtgctg tgccccaaag 841 ggccactgag gatgctggtg gaaactgccc aggagagaaa tgagcccata tttcctgccc 901 tgatatactc atctgccatg gtgtggacgg tgggcatggc aaagctggac ccctcctctc 961 aaggagcgct gcagctcccc tatgacccag agatggaaga agactcctac gacagttttg 1021 gagaaccctc ataccctgaa gccttcgaag cccccctgcc tggctaccca ggggaggagc 1081 tggaggagga ggaggaaagg ggcgtgaagc tcggcctggg agacttcatc ttctacagcg 1141 tcctggtggg caaggctgca gccactggca acggagactg gaacactacg ctggcctgtt 1201 ttatcgccat cctcattggc ttgtgtctca ccctcctgct gcttgctgtg ttcaagaagg 1261 ctctgcccgc cctccccatc tccatcacct ttggactcat cttctacttc tccacagaca 1321 acctggtgcg ccctttcatg gacactctgg cctcccacca gctctacatc tgacaggagc 1381 caggcggagg ctccgagagc tatgggggcg tcactggatg caggtgtata gttttacact 1441 ctagtgccat atatttttta aagaaatttt ctttccttac aaaagaagaa gaagaaaaaa 1501 aaaaaagaat aaaaacgtgt cgtgtttact tcgtgatgag gaagcagaag ccacccttcg 1561 gtgctacctg tcttgtcacc agactgcagc ttgcctgtcg gagcatctgt ggcgccggtg 1621 ggatgcttgg atgctcagca agcaagcgtc tcttcaggga tgaggtcgtg tgtggagcag 1681 gttggggagg atgcaggccc ctgtccacgt ctgtaagtct ccagggatga tcagaaggaa 1741 caggtgcatt gtgggaacca ggaggcgcca tcaccctgac cagaggtgga aagcccgtgt 1801 gcagtcatga atgtccccag tgctgtgttt gtgatgtctg ttactttaga accttagaag 1861 ccaagtcctg ttcttatttc tgcagtgact gctgggaagt ggcttaataa tgataccaat 1921 aaacagatgc tcctgctg //