LOCUS AK152360 2998 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:I830066O09 product:ADP-ribosyltransferase
(NAD+; poly (ADP-ribose) polymerase) 1, full insert sequence.
ACCESSION AK152360
VERSION AK152360.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2998)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by David A. Hume ( Depts. of Biochemistry
and Microbiology/Parasitology Institute for Molecular Bioscience
University of Queensland Brisbane,Q 4072 Australia ) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I830066O09
FEATURES Location/Qualifiers
source 1..2998
/cell_type="macrophage"
/clone="I830066O09"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I830066O09"
/db_xref="MGI:3569508"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="bone marrow"
CDS 81..>2998
/codon_start=1
/note="ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
polymerase) 1 (MGD|MGI:1340806 GB|AK088679, evidence:
BLASTN, 99%, match=2979)"
/note="putative"
/protein_id="BAE31150.1"
/transl_table=1
/translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF
DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS
GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP
TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE
VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG
ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW
VTPKEFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTAVNSSAPADKPLS
NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA
NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVAPKGKSAAPSKKSK
GAVKEEGVNKSKKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT
NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN
AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM
KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGGSESQILDLSNRFYTLI
PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK
TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN
RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD
PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG
T"
BASE COUNT 815 a 740 c 892 g 551 t
ORIGIN
1 ggcgcttgcg ggggaaaccg acacgttagc ggagcgcacc agcggcggcg tcgggctgcc
61 gctgcagcac gagaaggagg atggcggagg cctcggagag gctttatcga gtggagtacg
121 cgaagagcgg gcgcgcctct tgcaagaaat gcagcgagag tattcccaag gactccctcc
181 gcatggccat catggtgcag tcacccatgt tcgatgggaa agtcccacac tggtaccact
241 tctcctgctt ctggaaggtg ggccactcca tccggcagcc tgatgttgag gtggatggct
301 tctctgagct gcgctgggat gatcagcaga aggtcaagaa gacggccgag gctggaggcg
361 tggcaggcaa aggccaggat ggaagtggcg gcaaggcgga gaagacattg ggtgactttt
421 tagcggagta cgccaagtcc aacaggagca tgtgcaaggg ctgcctggag aagatagaga
481 agggccagat gcgcctgtcc aagaagatgg tggatccaga gaagccacag ctgggtatga
541 ttgaccgctg gtaccatcca acttgctttg tcaagaagcg ggacgagctg ggcttccggc
601 ctgagtacag tgccagtcag ctcaagggct ttagcctcct ctctgcagaa gacaaagaag
661 ctctgaagaa gcagctcccg gccatcaaga atgaaggaaa gagaaaaggt gacgaggtgg
721 atggaacaga tgaagtggcc aaaaagaaat ctaagaaagg gaaggacaag gatagtagta
781 agctggagaa ggccctcaag gctcagaatg agctgatctg gaatatcaaa gacgagctga
841 agaaagcgtg ttccaccaac gacctgaagg agctgctcat cttcaaccag cagcaggtgc
901 cgtcaggaga gtcagcgatc ttggacagag ttgctgacgg catggcgttt ggggcccttc
961 tgccctgcaa ggagtgttca ggccagctgg tctttaagag cgacgcttat tactgtactg
1021 gggatgtcac tgcctggacc aagtgcatgg tcaagacaca gaatcctagc cgaaaggaat
1081 gggtaactcc aaaggaattc cgagaaatat cctacctcaa gaagttaaag gtcaaaaaac
1141 aggaccgaat attccctcca gaaagcagcg ccccagcacc actggcactg cccctctctg
1201 tcacctcagc acccacagct gtgaactcct ctgctccagc agacaagccc ctgtctaaca
1261 tgaagatcct gactcttggg aagctctccc agaacaagga cgaagcaaaa gctgtgattg
1321 agaaactcgg aggcaagttg acaggatctg ccaacaaggc ctccttgtgt atcagcacta
1381 aaaaggaggt ggagaagatg agtaagaaga tggaggaagt gaaagcggcc aacgttcgag
1441 ttgtgtgtga ggacttcctc caggacgtgt ctgcctccac taaaagcctc caagagctgc
1501 tctcggccca cagcttgtcc tcgtgggggg ctgaggtgaa ggcagagcct ggtgaagtgg
1561 tggcccccaa ggggaagtca gctgcaccct ccaagaagag caagggtgct gtcaaggagg
1621 aaggtgtcaa caaatctaaa aagaggatga aattaactct gaagggagga gcagccgttg
1681 atcctgactc tggtctggaa cactctgcac acgtcctgga gaaaggtggg aaggtgttca
1741 gcgccacact tggcctggtg gacattgtga aagggacgaa ctcctattac aaactgcagc
1801 ttctggagga cgacaaggag agcaggtact ggatcttccg gtcctggggc cgggtgggca
1861 cagttatcgg cagtaacaaa cttgagcaga tgccctccaa agaggacgct gttgagcact
1921 tcatgaagct gtatgaagag aagactggga atgcctggca ctcgaaaaac ttcacaaagt
1981 atcccaagaa gttctaccct ctggagattg actatggcca ggacgaagag gcagtaaaga
2041 agctgacggt gaagcctggc accaagtcga agctgccgaa gccagtgcag gagctcgtgg
2101 ggatgatctt cgacgtggag agcatgaaaa aggccttggt ggagtacgag attgacctcc
2161 agaagatgcc cttggggaag ctgagcagaa ggcagatcca ggccgcctac tctatcctca
2221 gcgaggtcca gcaggcagtg tctcaaggcg gcagtgaatc ccagatccta gatctctcca
2281 atcgcttcta cactctgatc ccccatgact ttggaatgaa gaagccccca ctcctgaaca
2341 acgcagacag cgtgcaggcc aaggtggaga tgctagacaa cctcctggac atcgaggtgg
2401 cctatagtct tctcaggggt ggctctgacg acagcagcaa ggatcccatc gacgtcaact
2461 acgagaaact caaaactgac attaaggtgg ttgacagaga ttctgaagag gccgaggtca
2521 tcaggaagta cgtgaagaac actcatgcta ccacgcacaa cgcctatgac ctggaagtga
2581 tcgatatctt caagatagag cgcgaggggg agagccagcg ctacaagccc ttcaggcagc
2641 ttcacaaccg gaggctgctg tggcacggct ccaggaccac caactttgct ggcatcctgt
2701 cgcagggtct gcggatagcc ccacctgaag cgcctgtgac aggctacatg tttgggaaag
2761 ggatctactt tgccgacatg gtgtccaaaa gtgcaaacta ctgccacaca tctcagggag
2821 acccgattgg cttaatactg ctgggagagg ttgcccttgg aaacatgtat gaactcaagc
2881 atgcttcaca tatcagcaag ttacccaagg gcaagcacag tgtcaaaggt ttgggaaaaa
2941 ccacccctga cccttcggcc agcatcaccc tggagggtgt agaggttcca ctgggaac
//