LOCUS AK152293 1026 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830058M09 product:H3 histone, family 3A, full insert sequence. ACCESSION AK152293 VERSION AK152293.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1026) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830058M09 FEATURES Location/Qualifiers source 1..1026 /cell_type="macrophage" /clone="I830058M09" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I830058M09" /db_xref="MGI:3569441" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 112..522 /codon_start=1 /note="H3 histone, family 3A (MGD|MGI:1097686 GB|BC002268, evidence: BLASTN, 99%, match=1016)" /note="putative" /protein_id="BAE31102.1" /transl_table=1 /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" BASE COUNT 281 a 228 c 222 g 295 t ORIGIN 1 ggcgttcgca gccttcgccg cgccgctgcc gctctccaac gccagcgccg cctctcgctt 61 gccgagctcc agccgaagga gaaggggggt aagtaaggag gtgtccttac catggctcgt 121 acaaagcaga ctgcccgcaa atccaccggt ggtaaagcac ccaggaaaca actggctaca 181 aaagccgctc gcaagagtgc gccctctact ggaggggtga agaaacctca tcgttacagg 241 cctggtactg tggccctccg tgaaatcaga cgctatcaga agtccactga acttctgatc 301 cgcaagctcc cctttcagcg tctggtgcga gaaattgctc aggacttcaa aacagatctg 361 cgcttccaga gtgcagctat tggtgctttg caggaggcaa gtgaggccta tctggttggc 421 ctttttgaag ataccaatct gtgtgctatc catgccaaac gtgtaacaat tatgccaaaa 481 gatatccagc tagcacgccg catacgcgga gaacgtgctt aagagtccac tatgagggga 541 aacatttcat tctcaaaaaa attttttttc ctcttcttcc tgttatcagt agttctgaat 601 gttagatatt ttttccatgg ggtcaaaggt acctaagtat atgattgcga gtggaaacat 661 aggggacaga atcaggtatt ggcgtttctc cacgttcatt tgtgtgtgaa tttttaatat 721 aaatgcaaga tggaaagcat taatgcaagc aaaatgtttc agtgaacaca tttcaacagt 781 tcaactttat aacaattata aataaacctg ttaaaatttt ctggacaatg ccagcatttg 841 gattttttta aaataagtaa attttttatt gacggcaact aaatggtgtt tgtagcattt 901 ttatcacaca gtagattcca tccattcact atacttttct aactgagttg tcctacatac 961 aagtacatgt ttttaatgtt gtcagtcttc tgtgctgttc ctgtaagttt gctattaaaa 1021 tacatt //