LOCUS AK150756 2718 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015B19 product:pyrroline-5-carboxylate reductase family, member 2, full insert sequence. ACCESSION AK150756 VERSION AK150756.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2718) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830015B19 FEATURES Location/Qualifiers source 1..2718 /cell_type="macrophage" /clone="I830015B19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I830015B19" /db_xref="MGI:3567904" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" misc_feature 1..2718 /note="putative" /note="pyrroline-5-carboxylate reductase family, member 2 (MGD|MGI:1277956 GB|NM_133705, evidence: BLASTN, 99%, match=1092)" BASE COUNT 569 a 685 c 826 g 638 t ORIGIN 1 gggggcctct ctagcagttc atctggtgca tcccggtttg aaagctgttc cgagcaattc 61 gggtccatct ttttccacgc gcggacactg accccgggat ccccagagtc cccggatcgg 121 cgctcgccgg gatcctgcgg ccatgagcgt gggtttcatc ggcgcaggcc agctggcctg 181 tgctctggcg cggggcttca cggccgcggg cgtcctgtcg gctcacaaga taatagccag 241 ctccccggat atggacctgc ccacggtgtc tgcgctcagg gtaggctagg agggatggag 301 ggaagtgggc aagaggaaga ggcccaggaa aagcgtgtcc ggagatgccc tgagtctggc 361 aggctccgac tctcctttag ggaagtcatc attgtaagcc ctgcaccttc tctgaggcag 421 ccttgtgtgg tgggagctcc caggcaaagt tagtgtcgga tcctactggg gtgaaagtag 481 gcatataaga aaggttcttt ttgggctggt gagatggctc agcgggtaag agcacagact 541 gttcttccga aggtcctgag ttcaatccag caaccatatg gtggctcaca gccatccctt 601 aacaaaatct gatgcccttt tctggagtgt ctgaagacag ctacagtgta cttacatata 661 ataaataaat aattctttaa aaaaaaaggt tctttttgtt agtctgcttt gaatttcact 721 gcatagcccg tgttggcttc taagtctgga aaattctgct taccgatgtt gtaaatgaca 781 gcgttgctag gggacttggt gagttacgta gtttctttat tcaataaagc ttaatgtccc 841 aagtcttcta acatctggcc aatgtgggac aggtgagcag atgaagcact gtggatactg 901 tttgtgccta gtataggctt atgtccccaa cgctgtagga ccccagctat gcacctcaga 961 gccctagagg gggccccgtg gagacttgtt actccggtaa acagctgtga ggttgggagt 1021 gggctttgca gctctgcttc cagactctgg gtgctcagct ctttccatca gttctctctc 1081 acctggcaga gaggttcgag attgctgggg ttgaggggac agccactttc ctggccatgg 1141 tggagcagct taccattttg tacctatttg tccggtggca ggaaaggaaa gctgccattt 1201 ggggatagtc acggagccct gaaggcacag aacagagtgt tggctacagt tgacagagag 1261 ggtctgctat tctatgggtg gcacgggctc agccatatta cctagcatta cggacagggt 1321 cccctactcc ttactgcaga ggatgggtgt gaatctgacc cgaagcaata aggacactgt 1381 gcggcacagc gacgtcctgt tcctggctgt gaagccccac atcatcccct tcatcctgga 1441 tgagattgga gccgacgtgc aggagaggca catcgtggtc tcctgtgcag ccggggtcac 1501 catcagttct gtggagaagg tgctgttgcc ccggtgccca ttgtgtgaga ggaggggtgg 1561 cctgggagtg gctcagatcc gagggagcta tgtcctggac actcagttgg cttgctctcc 1621 tcctctagaa gctgatggct ttccagccgg cccccaaagt gatccgctgc atgaccaaca 1681 cgcccgtggt ggtccgagag ggggccaccg tgtatgccac gggcacccat gctctggtgg 1741 aagacggcaa gcttttggag cagctgatga gcagtgtggg cttctgcaca gaggtggagg 1801 aagacctcat tgatgctatc accgggctca gcggcagcgg gcctgcctat gcattcatgg 1861 ccctggacgc cctggcagat ggtggggtga agatgggcgt gccgcggcgc ctggcggtca 1921 gactgggagc tcaggcgttg ctgggagcag ctaagatgct gctggactca gaggaccatc 1981 caggccagct caaggacaac gtctgctccc ctgggggggc caccatccat gccctgcact 2041 tcctggagag tgggggcttc cgctctctgc tcatcaatgc ggttgaggcc tcctgtatcc 2101 gaaccagaga actgcagtcc atggctgacc aagaaaaggt gtctcctgct gcccttaaga 2161 agacccttct ggacagagtg aagctggagt cacccacggt gtccacgctg gccccaccca 2221 gctcagggaa actccttaca agaaaccccg cccagggaag caagaaggag tgaggaggac 2281 tctgtagggt gtccctgtcc cctgtagtac agggaggggc aggctcaggt ctgggggtga 2341 agctgcttac atctgttcac ctggtgccac cgagtccttc tcctgtcccg tggcagaagg 2401 tgctctgaag aggcggctga tgccagaagt cagcatgcct ctctgagaga ggtggaggcc 2461 ttagagttag catccccctc agctgaagtc tgtggagagc tttagttaga tccgaggctg 2521 cttcagattg atctccaggt gaggtgagag gaaacgggaa tcctctgaat taaaaacacg 2581 caaagaagcc tgtgtcttgg tgttgcaggt ggaagtgtgg ggagtcatcc tgtgacctct 2641 tgcttaactc ttctggacag gtgacccatt agaaggtgat gttcagggct gctttaataa 2701 agatcttatt tatttttg //