LOCUS       AK150467                 829 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus bone marrow macrophage cDNA, RIKEN full-length
            enriched library, clone:I830008C03 product:H3 histone, family 3A,
            full insert sequence.
ACCESSION   AK150467
VERSION     AK150467.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            Tissues were provided by David A. Hume ( Depts. of Biochemistry
            and Microbiology/Parasitology Institute for Molecular Bioscience
            University of Queensland Brisbane,Q 4072 Australia ) whose
            assistance we gratefully acknowledge.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=I830008C03
FEATURES             Location/Qualifiers
     source          1..829
                     /cell_type="macrophage"
                     /clone="I830008C03"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:I830008C03"
                     /db_xref="MGI:3567615"
                     /db_xref="taxon:10090"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="bone marrow"
     CDS             117..527
                     /codon_start=1
                     /note="H3 histone, family 3A (MGD|MGI:1097686
                     GB|NM_008210, evidence: BLASTN, 100%, match=828)"
                     /note="putative"
                     /protein_id="BAE29584.1"
                     /transl_table=1
                     /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
                     GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
                     GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
     regulatory      806..811
                     /note="putative"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      829
                     /note="putative"
BASE COUNT          226 a          195 c          193 g          215 t
ORIGIN      
        1 gcaattgtgt tcgcagcctt cgccgcgccg ctgccgctct ccaacgccag cgccgcctct
       61 cgcttgccga gctccagccg aaggagaagg ggggtaagta aggaggtgtc cttaccatgg
      121 ctcgtacaaa gcagactgcc cgcaaatcca ccggtggtaa agcacccagg aaacaactgg
      181 ctacaaaagc cgctcgcaag agtgcgccct ctactggagg ggtgaagaaa cctcatcgtt
      241 acaggcctgg tactgtggcc ctccgtgaaa tcagacgcta tcagaagtcc actgaacttc
      301 tgatccgcaa gctccccttt cagcgtctgg tgcgagaaat tgctcaggac ttcaaaacag
      361 atctgcgctt ccagagtgca gctattggtg ctttgcagga ggcaagtgag gcctatctgg
      421 ttggcctttt tgaagatacc aatctgtgtg ctatccatgc caaacgtgta acaattatgc
      481 caaaagatat ccagctagca cgccgcatac gcggagaacg tgcttaagag tccactatga
      541 ggggaaacat ttcattctca aaaaaatttt ttttcctctt cttcctgtta tcagtagttc
      601 tgaatgttag atattttttc catggggtca aaggtaccta agtatatgat tgcgagtgga
      661 aacatagggg acagaatcag gtattggcgt ttctccacgt tcatttgtgt gtgaattttt
      721 aatataaatg caagatggaa agcattaatg caagcaaaat gtttcagtga acacatttca
      781 acagttcaac tttataacaa ttataaataa acctgttaaa attttctgg
//