LOCUS AK150467 829 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830008C03 product:H3 histone, family 3A, full insert sequence. ACCESSION AK150467 VERSION AK150467.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 829) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830008C03 FEATURES Location/Qualifiers source 1..829 /cell_type="macrophage" /clone="I830008C03" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I830008C03" /db_xref="MGI:3567615" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 117..527 /codon_start=1 /note="H3 histone, family 3A (MGD|MGI:1097686 GB|NM_008210, evidence: BLASTN, 100%, match=828)" /note="putative" /protein_id="BAE29584.1" /transl_table=1 /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" regulatory 806..811 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 829 /note="putative" BASE COUNT 226 a 195 c 193 g 215 t ORIGIN 1 gcaattgtgt tcgcagcctt cgccgcgccg ctgccgctct ccaacgccag cgccgcctct 61 cgcttgccga gctccagccg aaggagaagg ggggtaagta aggaggtgtc cttaccatgg 121 ctcgtacaaa gcagactgcc cgcaaatcca ccggtggtaa agcacccagg aaacaactgg 181 ctacaaaagc cgctcgcaag agtgcgccct ctactggagg ggtgaagaaa cctcatcgtt 241 acaggcctgg tactgtggcc ctccgtgaaa tcagacgcta tcagaagtcc actgaacttc 301 tgatccgcaa gctccccttt cagcgtctgg tgcgagaaat tgctcaggac ttcaaaacag 361 atctgcgctt ccagagtgca gctattggtg ctttgcagga ggcaagtgag gcctatctgg 421 ttggcctttt tgaagatacc aatctgtgtg ctatccatgc caaacgtgta acaattatgc 481 caaaagatat ccagctagca cgccgcatac gcggagaacg tgcttaagag tccactatga 541 ggggaaacat ttcattctca aaaaaatttt ttttcctctt cttcctgtta tcagtagttc 601 tgaatgttag atattttttc catggggtca aaggtaccta agtatatgat tgcgagtgga 661 aacatagggg acagaatcag gtattggcgt ttctccacgt tcatttgtgt gtgaattttt 721 aatataaatg caagatggaa agcattaatg caagcaaaat gtttcagtga acacatttca 781 acagttcaac tttataacaa ttataaataa acctgttaaa attttctgg //