LOCUS AK149827 3451 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530021G14 product:unclassifiable, full insert sequence. ACCESSION AK149827 VERSION AK149827.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3451) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G530021G14 FEATURES Location/Qualifiers source 1..3451 /cell_type="macrophage" /clone="G530021G14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G530021G14" /db_xref="MGI:3561066" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" misc_feature 1..3451 /note="putative" /note="unclassifiable" BASE COUNT 1184 a 682 c 676 g 909 t ORIGIN 1 aatgtgccca cagcaatttt ttggtaaaag ggaacattaa tgtgaaatca tcttccttca 61 tctccaaaca aagttttaac atcctattat gaagctgttg tggtgttaat caagaattgt 121 aagataaaat aatgaagata ttacaaaaag tcttaaaaac ctgatgagat gtctatttct 181 tgtctcaaac aacaattaaa ttggttattg cagaatattg atatttggtc tattgcatag 241 taaacttttt aggtaaaatt ggtaatcatt atacaaaaga taagttgtta aaaattgctt 301 ctatgcatgc ttttgtattt cctgtaaatt tatgcatgca tcccttaaga atacctctac 361 tgtatttata aacagccttt ctataggaga gaagcatatg tgattgtatc acatgtttat 421 tctttcgagt ttcctccttc ttcagcacag ataattgaat agtatgctgt agccagtgtt 481 ttgaaatctt gaaaaatcaa gcaggatatt ataaaaccgt aaaggaaaag atggaaagat 541 ctcccatgct cgtggattgg cagaattaat agtcaaaatg gctatcctgc cgaaagcaat 601 ctacagattc aatgcaatcc ccatcaaaat tctaactcaa ttcttcactg agttagaaag 661 ggcaatttgc aaattcatct agaataacaa aaaacctagc atagcaaaaa gtgttctcaa 721 caataaaaga acctctgggg gaatcaccat gcctgacctc aagctgtact tacagagcaa 781 ttgtgataaa aaactgcatg gtactggtac aatgacagac aggttaatca atggaataga 841 attgaagacc cagaaatgaa cccacacatg tatggttact tgatctttga caagggagct 901 aaaaccatcc agtggaaaaa cagacagcat tttctttttt tttaaacaca tttttattag 961 atattttctt tatatacatt tcaaatttca aatgctatcc cgaaagttcc ctatacaccc 1021 cccccccccg ctcccctacc cacccactcc cacttcttgg ccctggaatt tcactgtact 1081 ggggcatata aagtttgcaa gaccaagggg cctctcttcc cagtgatggc tgactaggcc 1141 atcttctgct acatatgcag ctaaagacac gagttctggg tgtactggtt agttcatatt 1201 gttgttccac ctatagggtt gcagacccct tcagcttctt gggtgctttc tctagctcct 1261 ccattggagg ccctgtgttc catcttatag atgactgtga acatccactt ctgtatttgc 1321 caggcactgg catagcttca tatgagacag ctataccagg gtcccttctt caaaatcttg 1381 ctggcatatg caatagtaag acagcatttt caacaaatgg tgctggcaca actggcagtt 1441 atcatgtaga agaatatgaa tcgatccatt cttatctcct tgtacaagct caggtctaag 1501 tggatcaaaa aactccacat aaaaccagag acactgaaac ttatagagga gaaaatgggg 1561 gaaagcctca aagatatggg cacaggggaa aaattcctaa acataacagc aatggcttgg 1621 gctgtaagat caagaatcaa caaatgggac ctcataaaaa ttgcaaagct tctgtaaggc 1681 aaaagatact gtcaataaga caaaaaggtc accaacagat tgggaaagga tttttaccaa 1741 tcctaaatct gataagggac taatatccaa tatatacaaa gagctcaaga agctgaactc 1801 cagaaattca aataacccca ttgaaaaata gggtacagag ctaaacaaag aattctcaac 1861 tgaggaatac cgaagggctg agaagcacct gaaaaaatgt tcaacatcct taatcatcag 1921 agaaatgcaa ctcaaaacaa ccctgagatt ccacctcaca ccagtcagaa tggctaagat 1981 caaaaattca ggtgacagca gatgctggct aggatgttga gaaagaggaa cacccctcca 2041 ttgttggtgg gattgcaagc tggtacaacc actctggaaa tcagtctggc ggttcctcag 2101 aaaactggac acagtactac cagaagatcc agcaatacct cttctgggca tatacccaga 2161 agatgttcca actggtaata aggacacatg ctccactatg ttcatagcag ccttatttat 2221 aatagccaga agctggaaag aacccagatg tccctcaaca gaagaatgga tacagaaaat 2281 gtggtacatt tacacaatgg agtactactc agctattaaa aacaatgaat ttatgaaatt 2341 cttaggcaaa tggatgtatc tggaggatat catcctgatt gaggtaaccc aatcacaaaa 2401 gaagtcattt gatatgcact cactcataag tggatttagc ccagaaactt agaataccca 2461 cgatacaatt tgcaaaacac aagaaagtca aaaagaagga agaccaacac gtggacactt 2521 cattcctcct tagaataggg aacaaaataa ccatggaagg agttacagag acaaagtttg 2581 gagctaagac gaaaggatgg accgtccaga gactgcccca cccagggatc catcccataa 2641 tcagccacga aatgcagaca ctattgcata tgccagcaaa attttgctga aaggaccctg 2701 atatagctgt ctcttttgag gctatgccag tgcctggcaa atacagaagt ggatgctcac 2761 agtcatctat tggatggaac acagggcccc caatggagga gctagagaaa gtacccaagg 2821 agttgaaggg gtctgcaacc ctataggtag aacaacaata ggaactaacc agtaccccca 2881 gagctcatgt ctctagctgc atatgtagca gaagatggcc tagtcggcca tcattgggaa 2941 gagaggtcct ttggtcttgc aaactttata tgccccagta caggggaaca ccagggccaa 3001 gaagtaggag tgggtgggga aggaagcagg gtgggggtgg ggagtatagg ggacttttgg 3061 gatagcattt gaaatgtaaa tgaagaaaat atctaataaa aaattgaaaa aataaaataa 3121 aatcataaag gatattataa aatagtagta gatttgaaag attgtttctt tactattctt 3181 ttgcatcctc aggattgtga aagatttcct ttcagtgttc tttatattaa ttttaaagag 3241 ccaatgaaaa ggtatcaatg gatagttctt tctcaaggca tggctaacag tcctacatta 3301 tgtcaaaaat ttgtggcaca agccattcag cctaatagac agcaatagcc aataatatac 3361 attatacatt acatggatga tatcttatta gcagggaagg atcctcagga cttgcttcta 3421 atttatagaa attcacagca ggcattagct g //