LOCUS AK149827 3451 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:G530021G14 product:unclassifiable, full
insert sequence.
ACCESSION AK149827
VERSION AK149827.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3451)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by David A. Hume ( Depts. of Biochemistry
and Microbiology/Parasitology Institute for Molecular Bioscience
University of Queensland Brisbane,Q 4072 Australia ) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G530021G14
FEATURES Location/Qualifiers
source 1..3451
/cell_type="macrophage"
/clone="G530021G14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G530021G14"
/db_xref="MGI:3561066"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="bone marrow"
misc_feature 1..3451
/note="putative"
/note="unclassifiable"
BASE COUNT 1184 a 682 c 676 g 909 t
ORIGIN
1 aatgtgccca cagcaatttt ttggtaaaag ggaacattaa tgtgaaatca tcttccttca
61 tctccaaaca aagttttaac atcctattat gaagctgttg tggtgttaat caagaattgt
121 aagataaaat aatgaagata ttacaaaaag tcttaaaaac ctgatgagat gtctatttct
181 tgtctcaaac aacaattaaa ttggttattg cagaatattg atatttggtc tattgcatag
241 taaacttttt aggtaaaatt ggtaatcatt atacaaaaga taagttgtta aaaattgctt
301 ctatgcatgc ttttgtattt cctgtaaatt tatgcatgca tcccttaaga atacctctac
361 tgtatttata aacagccttt ctataggaga gaagcatatg tgattgtatc acatgtttat
421 tctttcgagt ttcctccttc ttcagcacag ataattgaat agtatgctgt agccagtgtt
481 ttgaaatctt gaaaaatcaa gcaggatatt ataaaaccgt aaaggaaaag atggaaagat
541 ctcccatgct cgtggattgg cagaattaat agtcaaaatg gctatcctgc cgaaagcaat
601 ctacagattc aatgcaatcc ccatcaaaat tctaactcaa ttcttcactg agttagaaag
661 ggcaatttgc aaattcatct agaataacaa aaaacctagc atagcaaaaa gtgttctcaa
721 caataaaaga acctctgggg gaatcaccat gcctgacctc aagctgtact tacagagcaa
781 ttgtgataaa aaactgcatg gtactggtac aatgacagac aggttaatca atggaataga
841 attgaagacc cagaaatgaa cccacacatg tatggttact tgatctttga caagggagct
901 aaaaccatcc agtggaaaaa cagacagcat tttctttttt tttaaacaca tttttattag
961 atattttctt tatatacatt tcaaatttca aatgctatcc cgaaagttcc ctatacaccc
1021 cccccccccg ctcccctacc cacccactcc cacttcttgg ccctggaatt tcactgtact
1081 ggggcatata aagtttgcaa gaccaagggg cctctcttcc cagtgatggc tgactaggcc
1141 atcttctgct acatatgcag ctaaagacac gagttctggg tgtactggtt agttcatatt
1201 gttgttccac ctatagggtt gcagacccct tcagcttctt gggtgctttc tctagctcct
1261 ccattggagg ccctgtgttc catcttatag atgactgtga acatccactt ctgtatttgc
1321 caggcactgg catagcttca tatgagacag ctataccagg gtcccttctt caaaatcttg
1381 ctggcatatg caatagtaag acagcatttt caacaaatgg tgctggcaca actggcagtt
1441 atcatgtaga agaatatgaa tcgatccatt cttatctcct tgtacaagct caggtctaag
1501 tggatcaaaa aactccacat aaaaccagag acactgaaac ttatagagga gaaaatgggg
1561 gaaagcctca aagatatggg cacaggggaa aaattcctaa acataacagc aatggcttgg
1621 gctgtaagat caagaatcaa caaatgggac ctcataaaaa ttgcaaagct tctgtaaggc
1681 aaaagatact gtcaataaga caaaaaggtc accaacagat tgggaaagga tttttaccaa
1741 tcctaaatct gataagggac taatatccaa tatatacaaa gagctcaaga agctgaactc
1801 cagaaattca aataacccca ttgaaaaata gggtacagag ctaaacaaag aattctcaac
1861 tgaggaatac cgaagggctg agaagcacct gaaaaaatgt tcaacatcct taatcatcag
1921 agaaatgcaa ctcaaaacaa ccctgagatt ccacctcaca ccagtcagaa tggctaagat
1981 caaaaattca ggtgacagca gatgctggct aggatgttga gaaagaggaa cacccctcca
2041 ttgttggtgg gattgcaagc tggtacaacc actctggaaa tcagtctggc ggttcctcag
2101 aaaactggac acagtactac cagaagatcc agcaatacct cttctgggca tatacccaga
2161 agatgttcca actggtaata aggacacatg ctccactatg ttcatagcag ccttatttat
2221 aatagccaga agctggaaag aacccagatg tccctcaaca gaagaatgga tacagaaaat
2281 gtggtacatt tacacaatgg agtactactc agctattaaa aacaatgaat ttatgaaatt
2341 cttaggcaaa tggatgtatc tggaggatat catcctgatt gaggtaaccc aatcacaaaa
2401 gaagtcattt gatatgcact cactcataag tggatttagc ccagaaactt agaataccca
2461 cgatacaatt tgcaaaacac aagaaagtca aaaagaagga agaccaacac gtggacactt
2521 cattcctcct tagaataggg aacaaaataa ccatggaagg agttacagag acaaagtttg
2581 gagctaagac gaaaggatgg accgtccaga gactgcccca cccagggatc catcccataa
2641 tcagccacga aatgcagaca ctattgcata tgccagcaaa attttgctga aaggaccctg
2701 atatagctgt ctcttttgag gctatgccag tgcctggcaa atacagaagt ggatgctcac
2761 agtcatctat tggatggaac acagggcccc caatggagga gctagagaaa gtacccaagg
2821 agttgaaggg gtctgcaacc ctataggtag aacaacaata ggaactaacc agtaccccca
2881 gagctcatgt ctctagctgc atatgtagca gaagatggcc tagtcggcca tcattgggaa
2941 gagaggtcct ttggtcttgc aaactttata tgccccagta caggggaaca ccagggccaa
3001 gaagtaggag tgggtgggga aggaagcagg gtgggggtgg ggagtatagg ggacttttgg
3061 gatagcattt gaaatgtaaa tgaagaaaat atctaataaa aaattgaaaa aataaaataa
3121 aatcataaag gatattataa aatagtagta gatttgaaag attgtttctt tactattctt
3181 ttgcatcctc aggattgtga aagatttcct ttcagtgttc tttatattaa ttttaaagag
3241 ccaatgaaaa ggtatcaatg gatagttctt tctcaaggca tggctaacag tcctacatta
3301 tgtcaaaaat ttgtggcaca agccattcag cctaatagac agcaatagcc aataatatac
3361 attatacatt acatggatga tatcttatta gcagggaagg atcctcagga cttgcttcta
3421 atttatagaa attcacagca ggcattagct g
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