LOCUS AK148381 2906 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
library, clone:G370120E05 product:hypothetical Glycine-rich region
profile containing protein, full insert sequence.
ACCESSION AK148381
VERSION AK148381.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2906)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Cells were provided by Drs. William J Pavan and Stacie Loftus and
Denise Larson (Division of Intramural Research Genetic Disease
Research Branch National Human Genome Reseach Institute National
Institutes of Health (NIH) Building: 49, Room 4A82 49 Convent
Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we
gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G370120E05
FEATURES Location/Qualifiers
source 1..2906
/cell_type="B16 F10Y cells"
/clone="G370120E05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G370120E05"
/db_xref="MGI:3560461"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS <1..605
/codon_start=3
/note="hypothetical Glycine-rich region profile
containing protein (PROSITE|PS50315, evidence: InterPro)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE28520.1"
/transl_table=1
/translation="KRHAEGPAEGPSALVRPRPTLPPRRTQALSEPPKPSFGVHSGGC
GGGEGGAGCGPAPGLRGEGHRPRARPRGSRPVWGRGEGRDRTVAAPQLKTRPSGKLAG
KVEAPVPRPLSDRAARQGRGTRGPLPAFAPRRARAGPEARAKSPEDKSVADSSPGRGG
AACGAVRRLSARRRWWHRGRGTGLALFLGRGSWCKMAVIL"
BASE COUNT 711 a 707 c 761 g 727 t
ORIGIN
1 acaaaagaca cgccgagggg cccgccgagg ggccgtctgc cctagtccgt ccccggccca
61 cactccctcc ccgtcggacg caggcgttaa gtgagccccc gaagcccagc tttggggtgc
121 acagcggggg gtgtgggggc ggggagggcg gcgcgggctg cggaccagcg cccggcctgc
181 ggggggaggg gcatcgcccc cgcgcgcgcc cccgaggttc ccggcccgtg tgggggcggg
241 gagaaggccg ggaccgtacg gtcgccgcgc cccagttgaa aacgcgccca agcgggaagc
301 tagctggcaa agtggaagcc ccagtcccgc gcccactttc ggaccgcgcg gcgcgccagg
361 ggcgggggac ccgcgggcct cttcccgcct tcgctccccg ccgagcgcgg gccggtccgg
421 aggctcgggc caagtcgcct gaggacaagt cggtcgcaga ctctagcccc gggagaggag
481 gggcagcctg cggggcagtg cggagactgt cagcgcgtcg caggtggtgg caccggggcc
541 gagggacagg gctcgccctc ttcctaggcc gcggttcttg gtgcaagatg gctgttattt
601 tgtaagcctc tgagacaatg tgcaacacag ctgtagcagt ctaaggcaga gtaggccttt
661 ccaccccttc gctgtttgga ggagcgctgc agaaatctcg tgacataaga gtctaatgtc
721 agacacagga ggctgaaacg gcaggtagaa ggaaaagctg tttcccgctt tccttctgcc
781 cagtagcttg ggcaacagac tgcatagctc aagttctcat taagtgaccc acaaacatct
841 gaaccgtccc caggtggtat tgaccaggct acacaactct gggtgaaggc tttcggtaga
901 agagtcacaa aggtcccgta gggtactgat gaaggacagt agcatacatg taatctgaag
961 acctctcaaa gcagtcttat catgaacatt atcctgaaac agatatgtgg aaatcagata
1021 tgagagaaga aatggatttg gccaaggtca ctgaactgag gaacagaccc tagagggaaa
1081 aaaaacaaca acccaggcct cctgtttcat tattatttaa tgagtgttaa gtgttgatga
1141 acacatgcaa tctgcgatac taccctaaat gcacatatgc aaaaaaccct ccgcagagct
1201 gccagtgaaa aattcctata atttgagcca agaagcattt ttttcccctc ttgcttgttt
1261 gtgtttggtt ttcaggaaac taaaatattt gttgctggat ttatccaaga aggctgttac
1321 atatcaattg aatcagtcat atcttcaaga aatgttagct tgtcatagat agtactatct
1381 atgtatgcta ggtttcctca tacattcttc ctggctttaa gcagatgttt ctaagggatg
1441 gaaggacctt gtctggtgaa ctacttcgtg tggattgtgg gttctgtgaa ccgactgaag
1501 ttgcccatct ctgacatgga aatagtagtt acttgtgtga tggtagtccg caagctattt
1561 ctggaaatat gactgtgtat cctcttagta atcaggaagt ttccagattt gccatatata
1621 tatatatgcc atatatatat atatatggca tgccaattct gctccgaaca atttttggaa
1681 gactgggagt gcttcagtga acagcaccgg taccggtcca gccctgattg agtccttctc
1741 tagaagcatc gccttgcaca gggaagctgc acttggccag gggacaggat gctttggagc
1801 cccgaggatg gcaaacgact gtagctaata gaaacaggct ttatttccaa ttcatggcgc
1861 cgctaggaga gctgctcctg ggggggagaa aaagcctttt tcttttcaag gattcttaag
1921 gggcaccaga ggttagtctt ttgttgtctt agagtctccc cgtgtagctc ttggtttagc
1981 ctggaactga catgtagaca tgtagaccag cgggctggcc cccacctccc agggatctgc
2041 ctgctttcta agtgctggga ttaaaggcac atgccaacag ccccagagga cagactccac
2101 tcctggagct cagccacccc tcaacatttg gagtttatcg taatggaaag aggggagcaa
2161 gagcttaaaa tcaggttaaa atctttgcct agaataagat aattatggcc gctaattagg
2221 atttgcttat aagtgaaagg ataggataaa ttggcaaagc tagatgtgat ggtgcatgcc
2281 tataatccta gcagttcaga atcagacccg ggaggacctt tgggagtagg aggttagcct
2341 gctctccgga cggtgtccca aacctgttaa gtctacatgg gaagaccata tcaaaaagtc
2401 aaaaacaatg ccagccactt cattcttctt gctcactaag cacaaaaaac tgctgcctgt
2461 tggagatgtt tctgagcact taccaccctt ttctttgagg tgttgattta aatctgttgt
2521 ttgtttatgg tctgtttcct gccagtaaga atataaactc taggaatact gttgcctgtt
2581 tcttctactg aagcattgtc ccgctgcata catactaaca cattgggttg gagtcctttt
2641 tctttcattt ctttctttgt ttttgagaca aggtttctct gtgtagccct ggttgtcctg
2701 gaactcactc tgtagaccag gctggcctca aactcagaaa tctgcctgcc tctgcctccg
2761 agtgctggga ttaaagtcgt gtgacaccac acccagcaga gtcctttttc tattagctgt
2821 aatcattggg aaatctcacc cactccatgg aagttgtcat acattaaaat atatgaaata
2881 gcacaattaa ctcccatgta cccatt
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