LOCUS AK148111 1535 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
library, clone:G370019N06 product:presenilin 2, full insert
sequence.
ACCESSION AK148111
VERSION AK148111.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1535)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Cells were provided by Drs. William J Pavan and Stacie Loftus and
Denise Larson (Division of Intramural Research Genetic Disease
Research Branch National Human Genome Reseach Institute National
Institutes of Health (NIH) Building: 49, Room 4A82 49 Convent
Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we
gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G370019N06
FEATURES Location/Qualifiers
source 1..1535
/cell_type="B16 F10Y cells"
/clone="G370019N06"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G370019N06"
/db_xref="MGI:3560191"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 83..1429
/codon_start=1
/note="presenilin 2 (MGD|MGI:109284 GB|BC010403,
evidence: BLASTN, 99%, match=1466)"
/note="putative"
/protein_id="BAE28350.1"
/transl_table=1
/translation="MLAFMASDSEEEVCDERTSLMSAESPTSRSCQEGRPGPEDGEST
AQWRTQESEEDCEEDPDRYACSGAPGRPSGLEEELTLKYGAKHVIMLFVPVTLCMIVV
VATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLY
KYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWNFGAVGMVC
IHWKGPLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRM
LVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFGEP
SYPEAFEAPLPGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGNGDWNTTLACF
IAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI"
BASE COUNT 304 a 448 c 439 g 344 t
ORIGIN
1 gagtgggcgg ggccggcgct agcccaggag aggcgctccg cccgcggcgt aaactctacc
61 ccgcgccgcg gcggagcaga ccatgctcgc attcatggcc tctgacagcg aggaagaggt
121 gtgtgatgag cggacgtcct tgatgtcagc cgagagcccc acatctcgct cctgccagga
181 aggcaggcca ggcccggagg atggagagag cactgcccag tggaggactc aggagagcga
241 agaagactgt gaagaggacc cggaccgcta cgcatgcagt ggggctcctg ggcgaccgtc
301 gggcctggag gaagagctga ccctcaagta tggggcgaag catgtgatca tgctattcgt
361 gcctgtcacg ctgtgtatga tcgtggtggt ggccactatc aagtctgtgc gtttctacac
421 tgagaagaac gggcagctca tctacacgcc cttcacggag gacacgccct cggtgggcca
481 gcggctcctc aactccgtgc ttaacaccct catcatgatc agcgtcatcg tagtcatgac
541 catcttcctc gtggtactct acaagtatcg atgctacaag ttcatccatg gctggctgat
601 catgtcctcc ctgatgctcc tcttcttgtt cacctacatc tacctcgggg aagtgctcaa
661 gacctacaat gtggccatgg actatcccac actcttcctg gctgtctgga acttcggggc
721 agtgggcatg gtgtgcatcc actggaaggg gcctctggtg ctgcagcagg cttaccttat
781 tgtgatcagc gcactcatgg ccctggtgtt catcaagtac ctgccggagt ggtctgcctg
841 ggtcatcttg ggtgccatct ctgtgtacga tctcgtggcc gtgctgtgcc ccaaagggcc
901 actgaggatg ctggtggaaa ctgcccagga gagaaatgag cccatatttc ctgccctgat
961 atactcatct gccatggtgt ggacggtggg catggcaaag ctggacccct cctctcaagg
1021 agcgctgcag ctcccctatg acccagagat ggaagaagac tcctacgaca gttttggaga
1081 accctcatac cctgaagcct tcgaagcccc cctgcctggc tacccagggg aggagctgga
1141 ggaggaggag gaaaggggcg tgaagctcgg cctgggagac ttcatcttct acagcgtcct
1201 ggtgggcaag gctgcagcca ctggcaacgg agactggaac actacgctgg cctgttttat
1261 cgccatcctc attggcttgt gtctcaccct cctgctgctt gctgtgttca agaaggctct
1321 gcccgccctc cccatctcca tcacctttgg actcatcttc tacttctcca cagacaacct
1381 ggtgcgccct ttcatggaca ctctggcctc ccaccagctc tacatctgac aggagccagg
1441 cggaggctcc gagagctatg ggggcgtcac tggatgcagg tgtatagttt tacactctag
1501 tgccatatat ttttttaaag aaattttctt tcctt
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