LOCUS AK147640 5932 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
full-length enriched library, clone:M5C1097M17 product:kinesin
family member 1A, full insert sequence.
ACCESSION AK147640
VERSION AK147640.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 5932)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=M5C1097M17
FEATURES Location/Qualifiers
source 1..5932
/cell_line="UNDEFINED_CELL_LINE"
/clone="M5C1097M17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:M5C1097M17"
/db_xref="MGI:3573619"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6"
/tissue_type="brain"
CDS 130..5226
/codon_start=1
/note="kinesin family member 1A (MGD|MGI:108391
GB|BC062891, evidence: BLASTN, 99%, match=3830)"
/note="putative"
/protein_id="BAE28041.1"
/transl_table=1
/translation="MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPK
ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAG
KSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP
KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSH
AVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLT
TLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPA
DINYDETLSTLRYADRAKQIRCNAIINEDPNNKLIRELKDEVTRLRDLLYAQGLGDIT
DMTNALVGMSPSSSLSALSSRAASVSSLHERILFAPGSEEAIERLKETEKIIAELNET
WEEKLRRTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLL
YYIKDGVTRVGREDAERRQDIVLSGHFIKEEHCIFRSDSRGGGEAVVTLEPCEGADTY
VNGKKVTEPSILRSGNRIIMGKSHVFRFNHPEQARQERERTPCAETPAEPVDWAFAQR
ELLEKQGIDMKQEMEQRLQELEDQYRREREEATYLLEQQRLDYESKLEALQKQMDSRY
YPEVNEEEEEPEDEVQWTERECELALWAFRKWKWYQFTSLRDLLWGNAIFLKEANAIS
VELKKKVQFQFVLLTDTLYSPLPPDLLPPEAAKDRETRPFPRTIVAVEVQDQKNGATH
YWTLEKLRQRLDLMREMYDRAAEVPSSVVEDCDNVVTGGDPFYDRFPWFRLVGRAFVY
LSNLLYPVPLVHRVAIVSEKGEVKGFLRVAVQAISADEEAPDYGSGVRQSGTAKISFD
DQHFEKFQSESCPVVGMSRSGTSQEELRIVEGQGQGADAGPSADEVNNNTCSAVPPEG
LMDSPEKAALDGPLDTALDHLRLGSTFTFRVTVLQASSISAEYADIFCQFNFIHRHDE
AFSTEPLKNTGRGPPLGFYHVQNIAVEVTKSFIEYIKSQPIVFEVFGHYQQHPFPPLC
KDVLSPLRPSRRHFPRVMPLSKPVPATKLSTMTRPSPGPCHCKYDLLVYFEICELEAN
GDYIPAVVDHRGGMPCMGTFLLHQGIQRRITVTLLHETGSHIRWKEVRELVVGRIRNT
PETDEALIDPNILSLNILSSGYVHPAQDDRQFLDSDIPRTFYQFEAAWGSSMHNSLLL
NRVTPYREKIYMTLSAYIEMENCTQPAVITKDFCMVFYSRDAKLPASRSIRNLFGSGS
LRATEGNRVTGVYELSLCHVADAGSPGMQRRRRRVLDTSVAYVRGEENLAGWRPRSDS
LILDHQWELEKLSLLQEVEKTRHYLLLREKLETTQRPGPEVLSPASSEDSESRSSSGA
SSPLSAEGQPSPLEAPNERQRELAVKCLRLLMHTFNREYTHSHVCISASESKLSEMSV
TLMRDPSMSPLGAATLTPSSTCPSLIEGRYGATDVRTPQPCSRPASPEPELLPELDSK
KTPSPVRATETEKEPQRLLVPDIQEIRVSPIVSKKGYLHFLEPHTAGWAKRFVVVRRP
YAYMYNSDKDTVERFVLNLSTAQVEYSEDQQAMLKTPNTFAVCTEHRGILLQANSDKD
MHDWLYAFNPPLAGTIRSKLSRRRSAQMRV"
regulatory 5909..5914
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 5932
/note="putative"
BASE COUNT 1417 a 1711 c 1617 g 1187 t
ORIGIN
1 gagttccagg atcggggacc ctccccggtg ccagtgccca tgcacggcta tccccagtga
61 cgcctgagag gtgactctgt cctctctggg gcaactgcag ctgctgaact accaaccaac
121 tccacagaaa tggccggggc ctctgtgaag gtggcggtgc gtgtccgccc cttcaactcc
181 cgggaaatga gccgagactc caagtgcatc attcagatgt ctggaagcac caccactatt
241 gtcaacccca aacagcccaa ggagacaccc aagagcttca gctttgatta ctcctactgg
301 tcacatacct cgccggagga catcaactat gcctctcaga agcaggtcta cagggacatt
361 ggggaagaga tgctacagca tgcctttgag ggctacaatg tgtgcatctt tgcctatggg
421 cagacggggg ccggcaagtc ctacaccatg atggggaaac aggagaagga ccagcaaggc
481 atcattccac agctctgcga agacctcttc tctcgaatca acgacaccac caacgacaac
541 atgtcctact ctgtggaggt cagctacatg gagatttact gtgagcgagt ccgtgacctc
601 ctgaacccca agaacaaagg caacctgcgt gtgagggagc accctctgct ggggccttat
661 gtggaggacc tctccaagct ggctgtaacc tcctacaatg acatccagga cctcatggac
721 tcagggaaca aggccaggac tgtggcggcc acaaacatga atgagaccag cagccgttct
781 cacgcagtct tcaacatcat ctttacccag aagcgccatg atgcagagac caacatcacc
841 acagagaaag tgagcaaaat cagcctggtg gacctggcag gcagtgaaag agccgactcc
901 acaggagcca agggcacgcg actcaaggag ggggccaaca tcaacaagtc tttgaccacc
961 ctgggaaagg tcatctctgc tctggctgaa atggactctg gacccaacaa gaacaagaaa
1021 aagaagaaga cagatttcat cccttaccga gactccgtat tgacatggct tctccgggaa
1081 aacctcggtg gcaactcaag gacagccatg gtggcagccc tgagccctgc ggacatcaac
1141 tatgatgaga ccctcagcac actgagatat gcagatcggg ccaaacaaat ccgctgcaat
1201 gccatcatca atgaagaccc caacaacaag ctgattagag aactgaagga tgaggtgacc
1261 aggctgagag acctgctgta tgcccaaggt cttggcgata tcactgacat gaccaatgcc
1321 ctggtgggca tgagcccctc atcttcgctc tcagccctgt ccagccgtgc agcctctgtg
1381 tccagtctcc atgagcgcat cttgtttgct ccaggcagcg aggaggctat tgaaaggctg
1441 aaggaaacag agaagatcat tgctgaactc aatgagacct gggaggagaa gctgcggcgg
1501 acagaagcca tccggatgga gagggaagcc ttgctggctg agatgggtgt ggccatgagg
1561 gaagatggtg gtaccttggg tgtgttttct cccaaaaaga ctcctcatct tgtcaacctg
1621 aatgaggacc ctttgatgtc cgaatgcctc ctttactaca tcaaagatgg cgtcaccaga
1681 gtgggcagag aagatgcaga gaggcggcaa gacattgtcc tgagtggaca cttcatcaaa
1741 gaggagcact gcatcttccg gagtgactcc cgaggaggcg gagaagctgt ggtgaccctg
1801 gagccctgtg aaggagcaga cacatatgtc aacggcaaga aagtcactga gcccagcatc
1861 ctacggtcag gaaaccgcat catcatggga aaaagccacg tgttccggtt taaccaccct
1921 gagcaggccc gtcaggagcg tgagcgaaca ccttgtgcag agacacctgc tgagccagtg
1981 gactgggcct ttgcccagcg ggaactgctg gagaagcaag gcattgacat gaagcaggag
2041 atggagcaga ggctccagga gttggaggac cagtaccgga gggagcggga ggaggccaca
2101 taccttctgg agcagcagag gctggactat gagagtaagc tggaggccct acagaaacag
2161 atggactcca ggtactaccc agaggtgaac gaggaggaag aagagccaga ggatgaagtc
2221 caatggacag aacgagaatg tgagctggca ttgtgggcct tccggaagtg gaagtggtac
2281 cagtttactt ctctgcggga cctgctgtgg ggcaatgcca tcttcctgaa ggaggccaac
2341 gccatcagtg tggagctaaa gaagaaggtc cagttccagt ttgtcctcct cacggacacc
2401 ctgtactccc cactgccgcc agacctactg cccccagaag ccgccaaaga ccgagagaca
2461 cgacccttcc ccaggaccat tgtggcagtg gaggtccagg accagaagaa tggggccacc
2521 cactactgga cactggagaa actcaggcaa cgcctggacc tgatgcggga aatgtacgac
2581 agggctgcag aggttccctc cagcgtcgtt gaggactgtg acaacgtggt gaccggcggg
2641 gaccccttct atgaccgctt cccctggttc cgactggtgg gcagggcctt cgtatacctg
2701 agcaacctgc tgtaccctgt gcccctggtg caccgagtgg caatcgtcag cgaaaaggga
2761 gaggtgaaag gcttcctccg tgtggcggtg caggccatct cagctgatga agaggctccg
2821 gattatggct cgggtgtccg tcagtcagga actgctaaaa tctcctttga tgaccagcat
2881 tttgaaaagt tccaatctga gtcctgccct gtggtgggga tgtcccgctc aggaacttcc
2941 caagaggagc tgcgcattgt agaaggccag ggtcaggggg ctgatgctgg gccttcagct
3001 gatgaagtta acaacaacac ctgttcagct gtgcctcctg aaggcctcat ggatagccca
3061 gagaaggctg ccctggatgg gcctctggac acagccctgg accacctccg tctaggcagt
3121 accttcacct tccgggtgac agtcttgcag gcgtccagta tctctgctga atacgctgac
3181 atcttctgcc agttcaactt tatccaccgc cacgatgagg ccttctccac tgaacccctg
3241 aagaacactg gcagaggacc ccctcttggc ttctaccatg tccaaaatat tgcggtagag
3301 gtgaccaagt ccttcatcga atacatcaag agccagccca ttgtgttcga ggtctttggg
3361 cactaccagc agcacccgtt cccacctctt tgcaaggatg tcctcagccc cctgagaccc
3421 tcacgtcgcc acttccccag ggtcatgccg ttatccaagc cagtgcccgc cactaagctc
3481 agcacgatga cacggccttc cccaggtccc tgccattgca agtatgacct gctggtctac
3541 ttcgagatct gcgagctgga agccaatggc gattacatcc ctgctgtggt ggaccaccgt
3601 ggtggcatgc cgtgcatggg gactttcctt ctccatcagg gcatccagag acggataact
3661 gtgacactgt tacatgagac aggaagccac atccgctgga aggaagtgcg cgagctagtt
3721 gtgggtcgca tccgaaacac cccagaaact gacgaagctc tgattgaccc caacatcttg
3781 tccctcaaca tcctctcatc aggatacgtc catccagccc aggatgaccg gcagtttctt
3841 gattcggaca tacctaggac cttctaccag tttgaagcag cctggggcag ttccatgcat
3901 aactctctcc tgctgaatcg tgtcacccct taccgggaga aaatctacat gacgctctct
3961 gcctacattg agatggagaa ctgtacccag ccagctgtca tcaccaagga cttctgcatg
4021 gttttctact ctcgggacgc caagctaccc gcctcacgct ccattcgcaa cctgtttggc
4081 agtggcagcc tgcgggccac agaaggcaac cgtgtgactg gtgtgtatga gctcagcctt
4141 tgccacgtgg ccgacgcagg cagcccaggg atgcagcgtc ggcgccggcg ggtgctggac
4201 acatcagtag cctatgtccg gggtgaggag aacctggctg gctggaggcc ccgaagtgac
4261 agcctgatcc tagatcacca gtgggaactg gagaaactga gcctcttaca ggaggtggaa
4321 aagaccaggc actacctgct ccttcgggag aagctggaga cgacccagcg ccctggccct
4381 gaggtgctgt ccccagcctc cagtgaggac tctgagtccc gtagttcttc aggtgcctct
4441 tccccattgt cagccgaggg tcagccgtca cctctggagg ctcccaacga gaggcagagg
4501 gagctggctg tcaagtgctt acgactcctc atgcacacat tcaacaggga atacacccac
4561 agccacgtct gtatcagcgc cagcgagagc aagctctctg agatgtctgt caccctgatg
4621 cgggacccat ccatgtcccc tctgggtgct gctacactca ctccctcctc cacttgcccc
4681 tctctgatcg aaggacgata cggtgccact gacgtgagga ccccccagcc ctgctcccgg
4741 cccgccagcc cagagcccga gctcctgcca gaacttgact ctaagaagac tccctcccct
4801 gttcgggcaa cagagacaga gaaggagccc cagcgactgc tggtccctga catccaagag
4861 atccgagtca gcccaatcgt ctccaagaag ggatacctgc atttcctgga gccacacacg
4921 gctggctggg ccaagcgctt tgtggtggtg aggcgtccct acgcctacat gtacaacagt
4981 gacaaggaca cggtggagag atttgtgctc aacctctcca ctgcgcaggt ggagtacagc
5041 gaggaccagc aggccatgct caagacaccc aacacattcg ctgtgtgcac ggagcaccga
5101 ggcatcctgc tgcaggccaa cagtgacaag gacatgcacg actggctgta tgccttcaac
5161 ccgcccctgg ctgggaccat ccggtccaag ctctctcgaa ggagatctgc gcagatgcgg
5221 gtctgagttg aaagccttcc ggacttccag tggcccagac cactcccctg tccttaccat
5281 ctgttctgtc atctgccact cagcccttcc cccctaccca ccaccagggg acacctgtgc
5341 tgggcccagc aaccctacct ctggagggag gcctatacca catgacgaat tgtgctcccc
5401 ccagaggttg tgcgtgtcgt ggtttcttcc aaaattgctc tggtgggaag ttcggaatgc
5461 caggaaggtc agagggcccg agacccaggg tattgccgct gttctaatat ttttttaagc
5521 atagacagac ttataattaa tatacattag ttagtggcat tgaaacagtc ctctgagaca
5581 ttaactataa gactgtgttc tgtttataag tatttatttc taatgcctcc aggtagggct
5641 gtaaggttca tgtggagcta ccttctccta tccccccttc agcctgaccc tgttggttcc
5701 cacctgtatc tccagcctgc aaggggcaga gggagggagg gacgtgaaca aaccatggct
5761 cctcacagcc tggcacaggg aaactccgtc ctggccagtt ttgtctgaga tgcaccttgc
5821 atggtacgtg tgtgagaggt tgtgcaagtt ctgagactta ggcaattcag aagtcaccct
5881 tctgagggaa cagttcccaa aatggagcaa taaaggtggt gtgagcagtt cc
//