LOCUS AK147105 2256 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus cDNA, RIKEN full-length enriched library, clone:I920167P15 product:laminin, gamma 2, full insert sequence. ACCESSION AK147105 VERSION AK147105.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2256) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I920167P15 FEATURES Location/Qualifiers source 1..2256 /clone="I920167P15" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I920167P15" /db_xref="MGI:3572297" /db_xref="taxon:10090" /mol_type="mRNA" /note="pooled tissues: (dev_stage=16 days embryo,tissue_type=heart,sex=mix),(dev_stage=16 days embryo,tissue_type=kidney,sex=mix),(dev_stage=17 days embryo,tissue_type=heart,sex=mix),(dev_stage=17 days embryo,tissue_type=stomach,sex=mix),(dev_stage=17 days embryo,tissue_type=kidney,sex=mix),(dev_stage=17 days pregnant, adult,tissue_type=amnion,sex=female), (dev_stage=13 days embryo,tissue_type=liver,sex=mix)" /organism="Mus musculus" CDS 310..717 /codon_start=1 /note="laminin, gamma 2 (MGD|MGI:99913 GB|NM_008485, evidence: BLASTN, 99%, match=435)" /note="putative" /protein_id="BAE27677.1" /transl_table=1 /translation="MPALWLSCCLGVALLLPAAQATSRREVCDCNGKSRQCVFDQELH RQTGSGFRCLNCNDNTAGVHCERCREGFYRHRDRDRCLPCNCHSKGSLSAGCDNSGQC RCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQL" regulatory 2227..2232 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2256 /note="putative" BASE COUNT 555 a 586 c 540 g 575 t ORIGIN 1 ggtgcccttg agactccctc gccccctccg gttttgagga aggggtggct gatatctaca 61 acctgagttc tgcccaggac caccccggga gagaacggct gtgtgtagcg gggtgcgggt 121 ggagggaggg gatatggcac attccagaag gatctctgga ccgcagcctc agtaccacgc 181 cctcggcggg gccaggactg agtcagggag aagagtcgat aaaacacctg atcgagggaa 241 aaggaaggca cagcagagcg aagactcggc gcccggcagg cacccgcagc ggcggagcgc 301 ggcccggcca tgcctgcgct ctggctcagc tgctgccttg gtgtcgcgct cctgctgccc 361 gcagcccagg ccacctccag gagggaagtc tgtgattgca atgggaagtc caggcaatgt 421 gtctttgatc aggagctcca tcgacagaca ggcagcgggt tccgttgcct caactgcaat 481 gacaatacag cgggggttca ctgcgagcgg tgcagggagg ggttttaccg acatcgagac 541 agagaccgct gcctaccctg caactgccac tcaaagggtt ccctcagtgc tggatgtgac 601 aactctggac aatgcaggtg taagccaggt gtgacaggac aaagatgtga ccgatgtcag 661 ccaggcttcc atatgctcac cgatgctgga tgcacccgag accaggggca actgtaagca 721 cctgcctgag tttaacaact cggggttgtt ttatctccat cagcccgtca ttgagggaag 781 aactgaagac aggaacatga agcagagacc ttggaggacc acgacctcct gagttacttt 841 ccatgtcatg ttcagctacc tttcttttct ttaaagattt atttatttta ttttatatat 901 gtgaggatac tgtagctgtc ttcagacaca ccagaagagt ccattggatc ccattacaga 961 tggttgtgag ccaccatgaa gttgctggga attgaactta gggcctctgg aagagcagtc 1021 agtgctctta acctctgagc catctctcca gccccagcta cctttctcat acagcccaaa 1081 cccacctgcc taggaatggt gttgcctact gtgggccagg ctctcttata ccagttacat 1141 gtcaagaaaa taccccatag gcttgcccac aagctattct catggaggta gttccctctt 1201 cccgggtgta agttgacaac caagattaat tgtcatagca tccttactcc accattgcta 1261 ttaccaaggg aataatgaca cccacatata cttttgtgac ttcttcatgt ggggctgttt 1321 aattttatca ttatacaaat actatataca actgggatta tcattacact cattttaata 1381 agaagatact taaaccatga aaaattcaaa tgcccaatgc tactggtaat gatagagccc 1441 gtttggagac ccagagattc ggcacctgga tgcatgcatt tggctttcct tggggaacca 1501 agagggacac agaggcttct cccccattcc aaccagggac ccactggacc tcagcaaact 1561 ttgtgtagaa gactttttct ctgcccaatt gctggctcct tttgtttgaa acacctgctt 1621 tccaccctca gattctttta ttgaaggagg actcagactg tcttccttca atgtacgctg 1681 cctatcacac agcaatcaca gaggtacaga gcttagaggt agcaggggga gtctggtggt 1741 gaataatttg ccagaaagaa aattggcaga ggaatttttg agagcaaggg aaaagctaac 1801 taaaccctct gggcttaaac tgcttcatct gctgacatca gcagcctgcc caatgtttct 1861 ggtaatgatg gaccctagac ttaacctgct ctcgttactt ttcttgacct agcaagaccc 1921 cagctgttgc ttttctagac ttaacctgct tagttactac ttttcaagac ttagccagct 1981 tttactcatt ttctaagttt agcttgctct taattattgc tcttctagac ttcactgctc 2041 ctagttactt gcctaagttg cttctgagca gcatctgtct tggaggaata gataacacct 2101 ctgcagtgag ggtcttgagg gcagcggctg cacacgttca gacggctgac tgacttccag 2161 ccacctgtcc ccatacatca gcccatgaat agctccaaac tcatttccac ctgtggctac 2221 atcctgaata aactcttttg caaaacttgt ccttcc //