LOCUS AK146677 3848 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920040M20 product:ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 1, full insert sequence. ACCESSION AK146677 VERSION AK146677.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3848) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I920040M20 FEATURES Location/Qualifiers source 1..3848 /clone="I920040M20" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I920040M20" /db_xref="MGI:3571229" /db_xref="taxon:10090" /dev_stage="17 days pregnant adult" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="amnion" CDS 81..3125 /codon_start=1 /note="ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 1 (MGD|MGI:1340806 GB|NM_007415, evidence: BLASTN, 99%, match=3827)" /note="putative" /protein_id="BAE27352.1" /transl_table=1 /translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMTIMVQSPMF DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW VTPKGFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTAVNSSAPADKPLS NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVAPKGKSAAPSKKSK GAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVRGT NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMELYEEKTGN AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW" regulatory 3827..3832 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 3848 /note="putative" BASE COUNT 1026 a 935 c 1091 g 796 t ORIGIN 1 gacgcttgcg ggggaaaccg acacgttagc ggagcgcacc agcggcggcg tcgggctgcc 61 gctgcagcac gagaaggagg atggcggagg cctcggagag gctttatcga gtggagtacg 121 cgaagagcgg gcgcgcctct tgcaagaaat gcagcgagag tattcccaag gactccctcc 181 gcatgaccat catggtgcag tcacccatgt tcgatgggaa agtcccacac tggtaccact 241 tctcctgctt ctggaaggtg ggccactcca tccggcagcc tgatgttgag gtggatggct 301 tctctgagct gcgctgggat gatcagcaga aggtcaagaa gacggccgag gctggaggcg 361 tggcaggcaa aggccaggat ggaagtggcg gcaaggcgga gaagacattg ggtgactttt 421 tagcggagta cgccaagtcc aacaggagca tgtgcaaggg ctgcctggag aagatagaga 481 agggccagat gcgcctgtcc aagaagatgg tggatccaga gaagccacag ctgggtatga 541 ttgaccgctg gtaccatcca acttgctttg tcaagaagcg ggacgagctg ggcttccggc 601 ctgagtacag tgccagtcag ctcaagggct ttagcctcct ctctgcagaa gacaaagaag 661 ctctgaagaa gcagctcccg gccatcaaga atgaaggaaa gagaaaaggt gacgaggtgg 721 atggaacaga tgaagtggcc aaaaagaaat ctaagaaagg gaaggacaag gatagtagta 781 agctggagaa ggccctcaag gctcagaatg agctgatctg gaatatcaaa gacgagctga 841 agaaagcgtg ttccaccaac gacctgaagg agctgctcat cttcaaccag cagcaggtgc 901 cgtcaggaga gtcagcgatc ttggacagag ttgctgacgg catggcgttt ggggcccttc 961 tgccctgcaa ggagtgttca ggccagctgg tctttaagag cgacgcttat tactgtactg 1021 gggatgtcac tgcctggacc aagtgcatgg tcaagacaca gaatcctagc cgaaaggaat 1081 gggtaactcc aaagggattc cgagaaatat cctacctcaa gaagttaaag gtcaaaaaac 1141 aggaccgaat attccctcca gaaagcagcg ccccagcacc actggcactg cccctctctg 1201 tcacctcagc acccacagct gtgaactcct ctgctccagc agacaagccc ctgtctaaca 1261 tgaagatcct gactcttggg aagctctccc agaacaagga cgaagcaaaa gctgtgattg 1321 agaaactcgg aggcaagttg acaggatctg ccaacaaggc ctccttgtgt atcagcacta 1381 aaaaggaggt ggagaagatg agtaagaaga tggaggaagt gaaagcggcc aacgttcgag 1441 ttgtgtgtga ggacttcctc caggacgtgt ctgcctccac taaaagcctc caagagctgc 1501 tctcggccca cagcttgtcc tcgtgggggg ctgaggtgaa ggcagagcct ggtgaagtgg 1561 tggcccccaa ggggaagtca gctgcaccct ccaagaagag caagggtgct gtcaaggagg 1621 aaggtgtcaa caaatctgaa aagaggatga aattaactct gaagggagga gcagccgttg 1681 atcctgactc tggtctggaa cactctgcac acgtcctgga gaaaggtggg aaggtgttca 1741 gcgccacact tggcctggtg gacattgtga gagggacgaa ctcctattac aaactgcagc 1801 ttctggagga cgacaaggag agcaggtact ggatcttccg gtcctggggc cgggtgggca 1861 cagttatcgg cagtaacaaa cttgagcaga tgccctccaa agaggacgct gttgagcact 1921 tcatggagct gtatgaagag aagactggga atgcctggca ctcgaaaaac ttcacaaagt 1981 atcccaagaa gttctaccct ctggagattg actatggcca ggacgaagag gcagtaaaga 2041 agctgacggt gaagcctggc accaagtcga agctgccgaa gccagtgcag gagctcgtgg 2101 ggatgatctt cgacgtggag agcatgaaaa aggccttggt ggagtacgag attgacctcc 2161 agaagatgcc cttggggaag ctgagcagaa ggcagatcca ggccgcctac tctatcctca 2221 gcgaggtcca gcaggcagtg tctcaaggca gcagtgaatc ccagatccta gatctctcca 2281 atcgcttcta cactctgatc ccccatgact ttggaatgaa gaagccccca ctcctgaaca 2341 acgcagacag cgtgcaggcc aaggtggaga tgctagacaa cctcctggac atcgaggtgg 2401 cctatagtct tctcaggggt ggctctgacg acagcagcaa ggatcccatc gacgtcaact 2461 acgagaaact caaaactgac attaaggtgg ttgacagaga ttctgaagag gccgaggtca 2521 tcaggaagta cgtgaagaac actcatgcta ccacgcacaa cgcctatgac ctggaagtga 2581 tcgatatctt caagatagag cgcgaggggg agagccagcg ctacaagccc ttcaggcagc 2641 ttcacaaccg gaggctgctg tggcacggct ccaggaccac caactttgct ggcatcctgt 2701 cgcagggtct gcggatagcc ccacctgaag cgcctgtgac aggctacatg tttgggaaag 2761 ggatctactt tgccgacatg gtgtccaaaa gtgcaaacta ctgccacaca tctcagggag 2821 acccgattgg cttaatactg ctgggagagg ttgcccttgg aaacatgtat gaactcaagc 2881 atgcttcaca tatcagcaag ttacccaagg gcaagcacag tgtcaaaggt ttgggaaaaa 2941 ccacccctga cccttcggcc agcatcaccc tggagggtgt agaggttcca ctgggaacag 3001 ggatcccatc tggtgtcaac gacacctgcc tgctgtataa tgagtacatt gtctacgaca 3061 ttgctcaggt gaatctcaaa tacctgctga aactcaagtt caattttaag acatccctgt 3121 ggtaaagtgc gaggggtggg ctgtgcccag cacccagggc ctagggggca attctcccta 3181 gtgcctctgc accagacacc acaaaacctc agccatgctg ccgccgaagg gtggccccct 3241 caccgaatct ccttaggaag ggttttatac agacaggtta aagggctctg gtttcaagtc 3301 ccttgtccat gctgcactgg ggcaggccgg ttgtttgtgg tttgtcctac cagccacagc 3361 tccatagaca gcagctggca gtagagcaaa agttggggag aggattttgt tgtttgccta 3421 gactagtcct gagggaagaa acaccacgtc acagtcacga tgtctgcctt actggcttcc 3481 ccagggaagg aaaaatgtgc ttcctccctt tttttcaagg gttcatcttt gctttaattt 3541 tggcaaaatg ttaagcattt attttgagct aaaaataaaa gttaatttca tactatatag 3601 attttctttt ttatcttgta tgtccccctc ttagtctgct gagcttttgt tttgcttggt 3661 tttcagtgat agacatggga tagccaaaag aagggactac ctgaaacccc taactggggc 3721 gactgagcct gtagtgtggt cagttcaaag ttgcatttgg gattctatgt cttccaaatt 3781 gaaccgtctg taatcagtac agccacccaa agggctatag ttctcaatta aaatgcaaat 3841 ggatatct //