LOCUS AK145078 3479 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830038B02 product:unclassifiable, full insert sequence. ACCESSION AK145078 VERSION AK145078.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3479) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G830038B02 FEATURES Location/Qualifiers source 1..3479 /cell_line="RCB-0526 Jyg-MC(A)" /clone="G830038B02" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G830038B02" /db_xref="MGI:3562968" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /tissue_type="mammary gland" misc_feature 1..3479 /note="putative" /note="unclassifiable" BASE COUNT 812 a 899 c 811 g 957 t ORIGIN 1 ggccaaggcc cactctctac aatggtccct gtaaggtagc agtgagaaat gagagggcca 61 gaaccccagg gttgcacagg gtgggcctct taacgttctc atttggtctt cctgaccctg 121 gccactcagg agatcactat acagcagtgc atgttcccaa ggggcagggg cctctgcacc 181 caggagctaa ggataaacat gcaggaagtc ttgtctattg ttgacccatt gcactgggct 241 ggctagggtc cactgcacac cagcagtagc agggcgggtt aaggtccaca gaaacattgg 301 ctggggcttg gtctgtggga ctgcaggcct ttcacatccg aggtccccca ttattgggtg 361 ggggtagcaa ctcatgggtg aacaccctgt catccctgga caggctggag ctaggagtgt 421 cccaaccacc tggagaggac tgctcaaatg gcacggagag gtccaagtac ttgtcagttg 481 atgtcacagt gaggatgcgg tctaaatcct ctacctactg cttgaaggtg ggcctctgaa 541 gacactgcat gccaatatcc ccacgtgacc atgtacaggc cacgtgtgca gttgtggggc 601 ttgtccatgc agtggccctc tgtaagtagc ttgaaaagct cttccactgg gatgccagga 661 tacggtgaga tgtcctagcg gaggacacca aagaaccaga catcactctg gtgggtgtag 721 actctgtaaa aaagggcctc tgattccatc cacttcacag gtagcaggcc acttgtggtc 781 ttcttgtagt aatccaggtt gtgcacgtct tgggccaggc caaagtctgt aatcttcatc 841 acattgtccg aggtaaccag gacatttctg gcagccaagt ctctggatac acttctggga 901 agccaagtat tccgtgctcc atgttacctg gtaggcacag gacactagat ccttgcagat 961 aagctgttct cctggcagcc tgcagtccat gcctggaggc cattgtgccg gaaggaactc 1021 ttgtagattg ccttgtctgc atactccacc aacacataca gagctcaccc agtgcaggcc 1081 cagcaggtca tcatctccat ctcagatacc aggtccaaca gcatcttcac agtatcttct 1141 gccatgacag tctgtccaaa gcagccttct cccagtctta ccaagtgtca attgggtcct 1201 ggatagttcc tacttggggt cagcaggcag ctcaagttca gaaacattgg ccataatagg 1261 accttctcct gaagacacca agcaatccgg ataagggcta cattgaagtt catagaggaa 1321 ttagattcca aggacacctg tcagttaagc ggggaagtgc cttgggggac tgggcagact 1381 gtcaccacag ctgccaccac taggatgaag aggaagaagc ccaccccgta gtcgctgagg 1441 acacccgcac acatgctcct cagctgtgtc ttcagttagg tccttcccat cttcgttatc 1501 tcctgaggat ggagcatctg tcacatgcat actgaagcct ctgagagccc accaggatgc 1561 agtgggagac caccagttct gtaccattct tagcccagac tgtgggactt gtgggggcac 1621 ctccagatgt cagctccacg gtgtcctcac tgccaaaggc cacctgctcc tactggctag 1681 gttcaggccc tggaacctct gccgctctct gcacagctct ggaccggaag gctctgaagt 1741 aggtccagcc atcactgcca tgtagaatac ttttttttaa attaggtatt ttcttcattt 1801 acatttcaaa tgctatccca aaagcccccc atatcctccc cccactcccc tacccaccca 1861 ctcccacttc ttggccctgg cgttcccctg tactgaggca taaaaagttt gcaagaccaa 1921 tgggcctctc tttccaataa tggccaacta ggccatcttc tgatacatat gcagctagag 1981 acacaagctc tgggggggta ctggttagtt catattgttc cacctatagg gttgcagacc 2041 cctttagctc cttgggtact ttctctggct cctccattgg gggccctgtg atctatccaa 2101 tagctgactg tgagcatcca cttctgtgtt tgctaggccc cggcatagtc tcacaagaga 2161 cagctatatc tgggtccttt cagcaaaatc ttgctagtgt aggcaatggt gtcatcgttt 2221 ggaggctgat tatgggatgg atccccgggt atggcagtct cagaatactt ttatcacgcc 2281 gtctggtatt accatggctc cagagtgagg gtggggagag gcagcatcct gaagtgggtg 2341 cgcacgggca tgctgcaatc cacacccgga gcctgaggcg gtgggaggat gcctcacttg 2401 cagctccagc tctggccggc ccttccagag tctcctctgt cccagtggcc ggctgcccac 2461 cagtgagtct gtctgtcccc cacccccacc cccaccgccc actagagtga accgcgacac 2521 agatgatctt attgtaagca ttttattttt caaattaatg aggcccaact gaaggaaatg 2581 gtgtttccca tctgaccagc tttgtggaaa aactccctac ctacttttta agaaagaaac 2641 ctgataaagc cttatttaaa taaaatttta ttttgaacta tcttgatcat gcataaaagt 2701 tataaaaaaa actttccttg agaattgatc accctacatc ctgtcacctc agatacatat 2761 tcatatcagt tttctgtaaa ccaggatatt tttctacata accaaccatc aaaaacactg 2821 acacattgct actatttaac tctctagctc ttgtcagtct ttctcggttt ttctcttgtc 2881 gtttatggta aaggactttg gtctaagtta gctattccag ttgttaactc ttcttaagag 2941 tttccacaag tttttgttgt tgggttttgg gttttgtttg gggatagtaa gtccccctga 3001 ctggcctgca acctatagag taggctggcc tcagactccc agtgttctgt gtgctgagat 3061 taaaggtgta tgcccccata tccagcattt tttaacttct tgggtcaatg attggattgc 3121 cttagtttta tctctttaaa gatatagtcg taaagctgtt ctctgcatcc tctcaggtgg 3181 taatgccttg ttacttaaga ctcactgcag tcacttaatt caagtgactt cttacactac 3241 agagttactc cttttccttt ttaactcaca cctgtgtggg ggaagataat ctcacctctc 3301 gtacacgtgt tgcgccctca ccagattcag aggatagttt tcattatcat ggttgtatgt 3361 tcagatgtgt ctttggtaaa tttctaaacg gatgttttat gagagagttt atgttgtgtc 3421 agaattattt catctgattt tgtatactgt tattgtataa acaggtctgg ttatttccc //