LOCUS AK144157 658 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN
full-length enriched library, clone:G430048C20
product:hypothetical Cornichon containing protein, full insert
sequence.
ACCESSION AK144157
VERSION AK144157.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 658)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G430048C20
FEATURES Location/Qualifiers
source 1..658
/cell_line="CRL-1669 BCL1 Clone 13.20-3B3"
/cell_type="B cells"
/clone="G430048C20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G430048C20"
/db_xref="MGI:3560667"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="BALB/C"
CDS 24..443
/codon_start=1
/note="hypothetical Cornichon containing protein
(InterPro|IPR003377, evidence: InterPro)"
/note="putative"
/protein_id="BAE25737.1"
/transl_table=1
/translation="MEAVVFLFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKL
NKWVIPELVGHTIVTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIH
NRGQLKSHMKEAMIKLGFYLLCFFMYLYSMILALIND"
BASE COUNT 184 a 140 c 138 g 196 t
ORIGIN
1 cgggggtgga gcggcggcgg aggatggagg cggtggtgtt cctcttctcg ctcctcgact
61 gttgcgcgct catcttcctc tccgtctact tcatcattac attgtctgat ttagaatgtg
121 attacattaa cgccagatca tgttgctcaa aattaaacaa gtgggtgatc ccggagttgg
181 tcggccacac cattgtcact gtgctgatgc ttgtctccct gcactggttc atcttccttc
241 tcaacttacc tgtcgccacg tggaatatat ataggttcat tatggtgcca agtggcaaca
301 tgggagtatt tgatccaaca gaaatacaca accggggaca gttaaagtca cacatgaaag
361 aagccatgat caagcttggt ttctacctgc tctgtttctt catgtatctc tatagtatga
421 ttctagcttt gataaatgac tgaagctgga gaagccgggt tgaagccaag ctatactaca
481 cactgcacaa ttgaggagcc agagactact aaaccaccct tagaaccatg accagagcag
541 tatatatttt ggtctttgaa caaaaaaaaa aaaaaaaact atttttgctg tatttttacc
601 acataaagta tttaaaaaaa ataaattgag tttttgtaga tttctgattt ctgaactc
//