LOCUS AK143701 2671 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate spleen cDNA, RIKEN full-length
enriched library, clone:F430011B20 product:unclassifiable, full
insert sequence.
ACCESSION AK143701
VERSION AK143701.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2671)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F430011B20
FEATURES Location/Qualifiers
source 1..2671
/clone="F430011B20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F430011B20"
/db_xref="MGI:3552057"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spleen"
misc_feature 1..2671
/note="putative"
/note="unclassifiable"
BASE COUNT 832 a 563 c 542 g 734 t
ORIGIN
1 atgtgggaga acctacagct gcctgaggaa gacaatctcc tcctggctgc cttcaggtag
61 agatgtagaa ctcttggatt ctccagcacc atgtctgcct gcccgccgcc acacttcctg
121 ctatgatgat aatggactaa caagcctctg aaactctaag gtagctccaa ttaaatgttt
181 tcctttataa gagttgcctt ggtgtctctt cacagcaata aaaccctaac taagacagcc
241 tgggacatgc aaacatagct cagtgataaa ccaatttact acaatttata aaatgatatg
301 ctagggaaga agtgggtcag aaaggacctg taaataatgt ggatgtgact atcacggttg
361 ggaaaagaac atggcactat tgcataaggt tccatagctg cagcccatgc ctcagcatgc
421 cactgtgagg ctgatcgggt aaagaaattc ccacaccttc atcaggacct agatacacag
481 aaatgccgac agagcaatga atcagaagta atgctgtcaa gaggataatg gataaacact
541 atttacctaa aagatggttt tatagtagtg aaaaaaaatc aatgaactgg atgtaaatat
601 aacaacatgt atgcatcttt aaaatgtaat gaatgagtaa agaaagcaag gaaaaaggta
661 ataatttcaa cagtttaata aattgcgaaa ccaaggaaaa ctgaatacta cttttttagt
721 agtagtcatg ccttaaaacc tcattgtgca catgagacta agttaattat cacgaggaag
781 tttttcccaa attgtgctgc gcgtgaatat gcctaaaata aaccgtccag tgtcagactc
841 ttgaagtttg aaccaaagtg gtgacagagt cacactgaag cagaattccc tcctgcctca
901 tgcagactga caccctgctg gccttggtga tcccagagac cctcaccggg gaggagcagg
961 gagaaaagtt gtggggttca gaggtagtac gcctaatgta cgatatatac tcgtgagcat
1021 ggccttatgc cgcactgcta cgtacaatga atttttgcaa gggaaactta aaaagtaacc
1081 gtttggccca cagtttagtg ctctattacc tttttgagag gaagagtctg tatccattcc
1141 atggagttta catcaaagat atcaactgcg ttttcactat acacggagag atatggagca
1201 ttgtaacctg ggggaaggac agaaggacag aaggaagaca cagactgctg attatggtga
1261 actagtaaac cccaaacact ttgaaagacc taccctaagc aactgtagaa tggaattttt
1321 caaaacctca cagttattat ataagaataa tgttaaaaac atttttgaag taaacatcaa
1381 gaaatcataa agaaagaact gtattcttgt caaacaagaa ctttcattgc actttaaaga
1441 gttgggcttt taaagcagtt aaactgttga cagagaaaca aacatacgat gtgagaaatg
1501 tttatgtaag tgtcctattc cagaatggga gagcaagaga tgcatgacac atgtatctag
1561 agacatgtat gctacagatg tgtcacctgc agctgcatgg caggagcaga tgctcactac
1621 acacttgtgg aagaaatgga gacacgagcc acgagtacgt gattcactcg catgatggct
1681 accaacagaa atggctactc acagaaatga gttagatagt ttcattttta ctttacatta
1741 gaatgctcgg cttatctgac tcagctacaa aacaacattc atttacccgt tatgtcatgg
1801 ataaaaatgt tcatttcaga agaaataaaa cactgtaaat agttaaatct gggtagtagg
1861 gtcttttatt acagatttcc ttgcttttct gttataagcc ttactgtcct ggagcacatt
1921 ttctcacttg actttacctg gatggcccca tccctcatcc ctccactgtt cctgccgcag
1981 ggagaagtcc ccacctcctg cccagtagtg atttactaga actctgaatt ccaccctctt
2041 tgggcccttc tgggggcgtt ttattctact ttctgcagtt ttaaaatagt ccacctttct
2101 tactgatcct ccaatggctc tttcctcaca gcattcaaac aggctcaaga gatttccact
2161 gcaaacaaag cactgcggat cagacactct gctgacagca acggtaacat ggcactctac
2221 tgttctgccg ggagtcttcc ctatgctgtg caggcagaat gcgttgcatc tatttcactc
2281 aagacttcat ctcatatagt aaaataatat gtattcaata gtgattatta ttattccgtg
2341 ataaaagcat taaatgacat agcaatctta tttttttaca gaaaaagtga aataagtaca
2401 ttgaaatcta tgtataaacc ttgctatggt ttgaatattt ggaacaggga gagccactac
2461 ttggaggtat ggccctgttg gaataagtgt gtcactgtgg gtgtggcttt aagaccctct
2521 tccggcctgg aagccagtct tctcctagca gccttagacc tctcagctcc tcctacaaca
2581 tccttgcctg gactctgcca tgttcctgtc ttgatgataa tggactgaac ctctgaacct
2641 gtaagccagc cccaattaaa tactgtccat t
//