LOCUS AK141781 2998 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:D030066O13 product:unclassifiable, full
insert sequence.
ACCESSION AK141781
VERSION AK141781.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2998)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D030066O13
FEATURES Location/Qualifiers
source 1..2998
/clone="D030066O13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D030066O13"
/db_xref="MGI:3548472"
/db_xref="taxon:10090"
/dev_stage="9 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="whole body"
misc_feature 1..2998
/note="putative"
/note="unclassifiable"
BASE COUNT 748 a 797 c 755 g 698 t
ORIGIN
1 tatcaaaagc gccggtcagg gaaatggcat cggggaagta gaaggtggag gtggcgggag
61 atgaaagctt gaaaggatgc aggccaccaa actctcccag tggcaaccca agagacaggg
121 tacaccatgc cttgaaggcc tcgatgtcag gcattcggag gtgacagctc cgtgtcgctc
181 atacctggct ctcagcagcg ctgttttgag gcagcctttt acagagtgtt gattcctgcc
241 atgcaggctc tttagatcag aagaggcctt cacacaggga agccacagcg ggtggcagac
301 aaagccatac cgtagctgaa tcattatgga tgggcacaga aagtcccagg ctttggctag
361 caaccagagg cctctgccac tgctaagcac caggcctcac tgtagcacag acggaaagaa
421 caagtcacta gcgaggctaa cagcagtcca tggctaccat gcgcaccctc caccatcact
481 gggttaagcc tgtgttcata tatacaaacc gtgtgcatgc acacggcacc attacataac
541 tccctcctcc ttcctacacg tttactcaga caaccttggt gcccacacaa gtaccctctc
601 catgcaaggc tctcgtttgc acagccaggt gcagctcaca cctgctccca gctcccgtct
661 gcatcctctg acactaacat ggttgtccaa ggactggata taaaggccac cgctttatca
721 tcagagagcg atctattgtc ctgggttctg ttctgcctag cttcgcggta cttcccaagc
781 ccatgctaac tctctggagc ccaagagccc ttatctagcc aaagcctaat gggtctgagc
841 ttgggagcta ggtatacctt tgaccactgg gctgtagcag agctgtgtct gctcagcaca
901 tttccaagaa attccaaggc ggcagccctg ttatagtctc agccaccaaa ctgtcaccct
961 catcaggctg agtccttggg gcccggggag gggctgcagg gctgttttct attaaaatgg
1021 agagtttgac cctctgacag gctctgagcc ccaaccatca cccccttctt tattcaattg
1081 caagaggcaa gaaagaatac ttactgggtc atgtgactaa attgtccaag tgataagtca
1141 ggcttcattt gtggctagat ccaggaagtc caagggcatg gattgatata ctgtccctct
1201 ggactctgac caccacactg tctccattct cccattggta aaatgacgat aaatgtccca
1261 tgtctgactt ggttggttcc tgacccagaa tgaagagatg ctctctcttc cagaaagcaa
1321 gtatcagatc tcacaggact ctgactggac tggacaggac tctgctggag cctctaagtg
1381 gctgtggttg gcggcagagc aagggagaga acatgtaaca acatacggtt ctattctgac
1441 agaaaacagc cctttccctg gtgttacaca tgagcttgat gacagttaag tgctgagtct
1501 caggcctggg accctgtgcc caggccgcat ccttaactgg atctctctcc tttatgagcc
1561 caagttcata ggttatacaa gggaccttag ggctattgaa agtgaaggtc ctccggcctg
1621 ctgagacaaa agaagttctt gaatagccgt tgtccaacct ccgcactaat ccccgttgct
1681 tccctgcagc taagtgcttg ggcatcagtg agagcaggtt ctctctgagc gcatcactct
1741 cttgagggcc cagagagtat aaccaggctt cagccggcca aatgtagagg caggcatcag
1801 gccaggaagc tgccgtggag aagcaggaca ggttcaaaca tgtgaggccg gagaggggac
1861 ttcagcaacc atacgcagcg ttttcactct ccttcccaat catggcttcc ctttgagaac
1921 tagaagtggg tggctcttag gcccaatggg tgctggggac taaggtgtct agatctgggg
1981 aaatggttca cttactaaga aatccaaagc aaacagaaga atcccatgag aagggggaaa
2041 ctgagtctgc cagttttcga ggtctgggag agtggaaaag gaggccactc ccgccttctc
2101 ttcaaggaac taatctgccc acagccaagg gattaaagaa agagatagga agacaaacac
2161 ggtgattagt gtctttaaga tgcccaagtg cgtgttagca ctcaggagat ggaggccaga
2221 gaatcagagc aaaaccaggc tcagctccat actgggtttg agccagcctg agtggcatga
2281 gcctctgcct ccaaaaatca gggagagtgg agactctggc tcccacggac acacttcgtg
2341 gtcaagtgtc ttagtcaggg tttccattgc tgtgctgaag caccatggcc agaaagcaac
2401 gtagacagca gagggtttat ttcgcttgct cttccacctc gctcttcaca gctcaaggaa
2461 gtcaggacac agggcaggat cctggaggca ggagctgatg cagaggccat ggaggtgtgc
2521 tgcttactgg cttgtttccc ctggcttgct cagcttgctt tctcatagag cccaggatta
2581 ccaggccaag gatggcacca cccacaatgg gccctccttc attgatcact aattgagaaa
2641 ctgccttaca gttggatctc atggaggcat ttccttatct gaggctcctt cctctctgat
2701 gactctagct tctgtcaagt tgacacacaa aaccagcccg aatcgccaag gacctaaagt
2761 cctgcatctc cccatctaga agccccccac ccctgttctc aacgaccaag tttcacaata
2821 ttggacaggt atgactttga gtatcagcta gacttgggat ggtggaccac aggactcccc
2881 tcccatgcaa agatgcttgt atcgtaatct cagaacctgt gaacctgctg cctttcttac
2941 tggtggtcag aactgtcagg gttgcagcaa gtatttctag gttcttggcc ttttaccc
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