LOCUS AK140509 3714 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:B930015P18 product:nuclear VCP-like, full
insert sequence.
ACCESSION AK140509
VERSION AK140509.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3714)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B930015P18
FEATURES Location/Qualifiers
source 1..3714
/clone="B930015P18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B930015P18"
/db_xref="MGI:3546059"
/db_xref="taxon:10090"
/dev_stage="10 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
CDS 82..2649
/codon_start=1
/note="nuclear VCP-like (MGD|MGI:1914709 GB|AK004676,
evidence: BLASTN, 100%, match=3091)"
/note="putative"
/protein_id="BAE24409.1"
/transl_table=1
/translation="MKPRPGVFVDRKLKQRVIQYLSSNRCGKYVDTGILASDLQRLYS
VDYGRRKRNAFRIQVEKVFSIISSEKELKNLKELEDGHLAKRARQDEEDEYTESYSDD
DSNMEDYPDPQSANPMNSSLLSLYRRGNSESVSTTPKWGQREATTSTPLLTSKTGSVP
LKTPARESEGGWFIDKTPGGKKESLPLDLSDDQSNSKKQDSEIQILKDSSLLESDKKR
KGRAKGKGNKRKTENLQEVDGEIEALLQKKAKARSTELQISNVKFEDVGGNDATLKEV
CKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIV
SGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMD
DLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKL
RLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKQQAQQKKKPEIEGLPSE
GDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALAEVQPSA
KREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLGLGTPAGILLAGPPG
CGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV
DALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLD
KTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTALVRE
ASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSISIKDQVMYEALQRSLSQ"
BASE COUNT 1091 a 792 c 901 g 930 t
ORIGIN
1 gggggtttcc ggtacggcgg cgagcgcggc tgtggcagtc tttcccggta acaagaggcg
61 cccgtgcggg gcagcagcat catgaagcct agacccgggg ttttcgtaga caggaaactg
121 aagcagcggg tcattcagta cctcagtagt aacagatgtg gcaaatatgt ggacactgga
181 atcttagcat ccgacttgca aagactgtac agtgtagatt atggtcgaag aaaaagaaat
241 gctttcagga ttcaggtaga aaaagtattt agcataatta gtagtgagaa agaacttaag
301 aatcttaaag aactagaaga tggacatctg gcaaaaagag caagacaaga tgaagaggat
361 gagtacactg aaagctattc tgatgatgat tcgaacatgg aagattaccc agatccacag
421 tcagcaaatc ccatgaacag ctccctgctc tctttgtatc ggagaggaaa ctcagagtct
481 gtttcaacca ctccgaagtg gggacagaga gaagccacca cttccacgcc attgctgacg
541 tctaaaacgg gctccgtgcc attgaagacc cctgcccgag aatctgaggg aggatggttt
601 attgacaaaa ctcccggtgg aaagaaagaa agtcttccct tggacctatc agatgaccaa
661 agcaactcta aaaagcagga ttctgagatt cagattttaa aagactcttc tcttttggaa
721 agtgataaga aaaggaaagg tagggcaaag ggcaaaggaa acaaaagaaa aacagagaat
781 cttcaagaag tagatggaga aatagaagct cttctgcaaa agaaagccaa agcaaggagt
841 acagagttgc agatttccaa tgtgaagttt gaagatgttg gaggcaatga tgcaacatta
901 aaagaagtct gcaaaatgct catacacatg cgccatccag aggtatacca gcaccttggt
961 gtcgtgcccc ctcgtggagt tctcctgcat ggaccaccag gctgtgggaa gacattactt
1021 gcacacgcaa tagcagggga acttgacttg ccgattctga aagtggctgc tccagagatt
1081 gtgtccggag tttctggaga gtctgagcag aagctccgtg agttatttga ccaggctgtg
1141 tcaaatgcac catgtattgt tttcattgat gaaattgatg caattacccc caaaagagaa
1201 gttgcttcaa aagatatgga acgaagaatt gtagcccagc ttctaacctg catggatgat
1261 ctgaataacg tggcagctac agctcgggtc ctagttattg gagctactaa caggccagac
1321 tcattggatc ctgctttgag acgtgcagga aggtttgacc gagaagtctg cttgggtatc
1381 ccagatgagg cagccagaga aagaattctc caaacgttgt gccgaaaact gaggcttccg
1441 gaaactttta atttttgtca cttagcacac ctaacaccag gctttgttgg tgctgatctg
1501 atggctcttt gccgagaggc ggccatgtgt gcggtcaata gggtcttgat gaaacaacag
1561 gcgcagcaga agaaaaagcc tgagattgaa ggtttgccct ctgaaggaga ccaggaggaa
1621 aggctgggag ctgagcccac ttctgaaaca caggatgaat tgcaaaggct gttggggttg
1681 ctaagagacc aagatcccct ctcagaggaa cagatgcaag gactgtgcat tgaattgaac
1741 gatttcattg ttgctctagc agaagtccag ccttctgcca aaagggaagg ctttgtaact
1801 gtccctaatg tgacatgggc tgatattggt gccctggaag atattagaga tgagcttata
1861 atggcaatat tggcacctgt tcgcaaccca gaccagttca gaactcttgg tttggggact
1921 ccagctggca tcctcctagc tggtcctcct gggtgtggaa aaactctgct agcaaaggct
1981 gtggcaaatg agtctggact aaattttata tctgtcaaag gccctgaatt attgaatatg
2041 tatgttggtg agagtgaacg tgctgttcga caagtttttc agcgagccaa gaactcagcc
2101 ccctgcgtga tattttttga tgaagtggat gctttatgtc ctcggagatc agaccgagaa
2161 acaggtgcta gtgttcgtgt ggtgaatcag ctgcttacag agatggatgg cttagaaaca
2221 cgccagcaag tttttatttt ggctgccacc aatagaccag atatcattga ccctgccatt
2281 ctgcgcccag gccgcctgga caaaacgctc tttgtgggtt tgcctccccc agcagaccgt
2341 gttgccatat taaagactat tacaaaaaat ggcaccaaac ctccactgga tgaagatgta
2401 aatttggaaa caattgctaa tgaccttcgt tgtaattgct atacgggtgc ggacctcact
2461 gctctggtac gggaagcttc tctctgtgcc ctgagacaag aaataacagc tcagaagaat
2521 ggtgttggag caggtgagct taaggtcagt cataagcact ttgaagacgc tttcaagaaa
2581 gtaaaaccat ccatatcaat aaaggatcaa gtgatgtatg aagctctgca gaggtccctc
2641 agtcagtgat gtttgcgcta cctggcatgg aggaggtgtc tagtgtgtgg aactcaccac
2701 gaatcacagt tactctggag ggtctacttt cagcttgaca ccaatgatcc tttttttttt
2761 tttttaaatc agaaccagtt atctctttat tttttggaaa gtaagttggc tgtgttagta
2821 aaaccacatc tgctagtgtg ggctgataaa ccatgtgcta ggccccaaga accctgagcc
2881 actgtcctga ccctgctgac tgacaggcaa gggacagcca cccaagccca ataagaggag
2941 taaaaaaagt agcaaaattg cattcaccac tgtctcccag gctttgaaag gtagcagtct
3001 aggctataaa agtctagaag ctctgcatag ggagtgttaa gcctgcagca aaacaacttg
3061 taaaaactca ataaattata gatagacttg taacagatat ctattaacat ctgaaccttc
3121 ttacaggatc agtccctccc tgggcacagg ctcctgcctg gaatacatag caattagaat
3181 aatctgtatg aaaaatacca gttcaccttg aaatttttaa acatctccta aagaaagttc
3241 ctatataaat ctaatccctc acaaaagagg gccgaaggca acaggaaacg ctctctggcg
3301 ccattactaa ctaggagagc tagctgctca tgcgccaagg ggctatgtcc agcctggcag
3361 aggccagact cacggtctca gcaactccct aaatccagca tgaacctctt tcactgttaa
3421 taagttacaa cttaaaatgt ctgaaatacc ctgggactaa atgctgtacc ctgaggttgg
3481 ggactggagc tctgggagtt gataagtata gctttacaaa tatacaggtc cagtacaaac
3541 aaaactgcca tgccagaaaa gtcccttgct tctcagcctg ttcttgccag tttactagtg
3601 agccccatgg agtatcttgc tcccttgggc ttcagctttg cctttttttc atatagatgt
3661 gtgtgtgtgt gtgttacaca acatctattt atataaatat acattttcct ctgt
//