LOCUS AK139991 1583 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230033M16
product:unclassifiable, full insert sequence.
ACCESSION AK139991
VERSION AK139991.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1583)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B230033M16
FEATURES Location/Qualifiers
source 1..1583
/clone="B230033M16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B230033M16"
/db_xref="MGI:3545260"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="corpora quadrigemina"
misc_feature 1..1583
/note="putative"
/note="unclassifiable"
BASE COUNT 378 a 317 c 316 g 572 t
ORIGIN
1 taacgggaaa agcatgatat agattaattc tatacatctt tttatttaag ttaccatttt
61 atttatttat tttgaataat gtatttattt ttgctttgtt atatatttgt gccctgagtt
121 ttgcctatat gatgtctgta tgagggtgtc agataacctg aaacaacaat tacagactgt
181 tgtgagctgc catgtgggtg ctgagaattg aaccctggtc ctttggaaga ataatagcca
241 gtgttcttaa ctactgagcc atgtctccag cccccaagtt accattttat gaatacatta
301 attatgcata ttaatgagat tcagtgtgct tttattcatg cacatacagc ccgggcagct
361 caaatctaac tgcccccttc ccatctttcc cccatacact tcccaacctc taggaactgt
421 gcatccactt tcaagtcagc ttccttagtg tccgcctcag attttacaga tttctaaaga
481 gttatttcat gtgtatgagt gttttgcctg cgtgtatata tgtgttccac atgtgttcac
541 ggtgtacagg gatgtcagag aggacatcag atctcctgga actagagtta caaatggttg
601 tgagccatca tgtgagggcc tgggtcttct gtaagaacag taaagtacct ttaaccactg
661 agccatctct ccaagactcc accttgtatt ttgtgacaga gcctatcact gaacctgaag
721 ctcactgatt tgattagctt actgaccaaa aagccacaga gatcctcctg tctctgtgac
781 ccctgttcca gaaggactgg catgtgcatc tgtgcctggc tttcatgtca gcactgaggc
841 tctgaaccca agtccccatg cctgtgtgac aagcattcct gacttctgag gtctctctcc
901 cgctgtttca ttcttatttg ttgcagtcgt ttaatgatac attgttgctg cttgttgatg
961 agcacctcag ctaattccat cggttagcta ttgagaattc cataatgcat atgaatgttc
1021 aggtatctct tttagatgcc gatttgtatt cattttagag gcggagcagg aggtgactag
1081 atggaaaact tacttttggt gttttggggg aataatagaa tttttaagaa tttgtttaag
1141 aaaaactcat actgttctcc ataacaactg tatggtttgt gccccaatag cagtgtgtaa
1201 gagtgtcttt tctctgtatc ctcctcagtg tttaaacagg aacagccatt ttacttggaa
1261 tgggatattg ctgtagtttt atttacattt ctctgatgtc taggagactg aaaatttttt
1321 aacctatttc ttggccattt gtggggttgt ttgtttgttt gtttggttgg ttggttggtt
1381 ggttttcgaa gagtgtctct tcagatcatt tgctcctttt aaacttgggt tacttgtggt
1441 cattattaag taatcctcat gtattctagc tgttagctct gtcacatggc tagctggcaa
1501 atgccctgca ttctatacat tgtctccttg cttggttgat tattctctct ctactcagtt
1561 tagtaaaatc ctatttttct att
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