LOCUS AK139350 2744 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
enriched library, clone:A830021A15 product:unclassifiable, full
insert sequence.
ACCESSION AK139350
VERSION AK139350.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2744)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A830021A15
FEATURES Location/Qualifiers
source 1..2744
/clone="A830021A15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A830021A15"
/db_xref="MGI:3544117"
/db_xref="taxon:10090"
/dev_stage="10 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cortex"
misc_feature 1..2744
/note="putative"
/note="unclassifiable"
BASE COUNT 818 a 528 c 574 g 824 t
ORIGIN
1 agtagcatgg atagttgatg gcaaatttgg agcagacgac ttctgtttaa cttaaaatta
61 gtcgtatttt aatggcttgg gatttggtgc aaacaaacat gattgatagc tggacagaca
121 tgctcgtcat gaaaaaaaaa aaaaaagaac cattttgaag cccgattggg gccaaacatt
181 tacaccttgc ttcctagtaa ccagttgatg aagcgcgtct agaacgttgt tggacaccat
241 gttgaattat tccccatcgg ttgtgaagaa ctgtgctaca ttcaggctta cccattgaac
301 tcagtatata tattttttcc ctcctgcctt ttgtctggtg ggacaccatt cttgttgctc
361 ttctgtgtaa tgaagttcaa atgcttgttt ggaaacttta tttaacagtt tagaaggctt
421 gataggaaga ggtcattagt ctgaagagta tacattggac aggaaagaat ttcctttcgt
481 ttttccaaat ctttccgcct tatttagcgt gagatctttg cagcttggtt catggattct
541 agccttgccc gttgcgcagt atatgctgat cagatgataa accagtgaac tatgtcaaaa
601 gcactctcaa tattacattt gacaaaaagt tttgtacttt tcacatagtt gttgccccgt
661 aaaagggtta acagcacaat tttttaaaaa taaattaaga agtatttata ggattaaagt
721 gacttcattt gtatacattt ggaatctaaa ccagcttaaa aacagtgtcc tctgtgactg
781 agatatgcag tgtaagctga tgctcttctg gagtgccacg tgagacatgg catggtcaga
841 aacagtgttc agaaggacac ggcacaggaa agccagagag atactttccc ctttttattt
901 tattcctgaa gggacatcag tacctgatac tgaagaaatt caagattcaa aaggaaaatt
961 ttataaataa accagtacag aagatcagca tcagtctagg ttttcaagaa agcttgttcc
1021 aagttctctg aacttgaggg aatcgttttg atgtgatcta gcagaagtag acatcagaag
1081 atagacctac tttgggaatt tatagtgtag ttaaatctta gaggaagtca gcaggctaca
1141 aacatttatg taaactggaa ttaaagcctg agtcatttct cctaattgcc cttaatgtcc
1201 aacatatagg gacactcatt taaagaagat tccttctcag cttctcagat gttgccataa
1261 tgaacctcat tcaaactggt gctgtggaca gtctttccct ctccctcccc ttttagttta
1321 cgggaatgtt tcctttatgg aaaaaaagtg acttgtcatt ttgaagaccc tatatctaac
1381 ataagcctga ttgatgttca tggtgttttc aactccataa ttgctgggtc taaccagtct
1441 cccttgaaat ccatgttttc caataggaga taaccagggt gaccacagct cttggaagga
1501 aaagtggaat taactccaat gtatcctgat gaacaacaac aacaaaaatc tggtacaact
1561 tgcccttgag gccaagccaa gtccatagca ttcaccatga tcatatgccc ctcgggatcc
1621 tgagagaaga gagaggcttg tactgagggg tcttcccatt gtgggggtcg cagggaggga
1681 aaagccagga aggcagtggt cattctccca aagtccaccc atcgtaagga ggtgacagat
1741 cggagtcagc agattagtaa ttcaaatggg taatggaaaa gattccttta agcttcattt
1801 ttcagagacc accactttag aaaatcagag aaatcctgtt ttgatacttc ttagttaaaa
1861 taatatgtta ccgtttatct ggtacttcat tttcttgact aaaattactt ttcactttaa
1921 gcttgaataa aaattttcat tcataactgt atataattaa gtggcaactc ctctttacct
1981 cagtgcagtt aagaccatct tttgattgat ataccctgaa gccagtaatc catacacctc
2041 agtctacagt gacaatccct gacaccatgt gggcacagaa ctccacagct gtttacagat
2101 gtggttacag tgtaccacgt ggcatgtgca tgatgctccc tgagggctgt acccatcagg
2161 gcagttttgt atccagctgc acctagaccc gcctgttcac tgcttctgaa gtacatttaa
2221 aaacactggg aggtaagagc gtgccccgaa ggtgagggcc atgaccagaa cataactcct
2281 gttagagtgg agttacaact atgcaaaggt gttgatagta gctaggtgag ttcggtttcc
2341 aagtctgtct taactggccg ctccctctct agactggtac ttgactgtgc caatttgctg
2401 taagcatctg tttcgtatat ttgccatgaa gtgagtgtgg tagaaaggtg aagaaagcta
2461 gggtttatgg tggaagaacc tggtgacagg attacgtgaa aatctctgac attgtgataa
2521 actcgataaa ggcttaagag aattctgtca agcctgccac aagatgctaa ccaatgtata
2581 aactgaaaag taccaatact ttttgcacat agatcaaaat agtggagaat tttggctcca
2641 aaaatcaggt tagtaggctc aattccatgt gcttaaaatg tttctgttgt taatgcatcg
2701 attaagggct agagtaagaa tggaattaaa tgtctttttc ctct
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