LOCUS AK138767 2446 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430057P12 product:hypothetical protein, full insert sequence. ACCESSION AK138767 VERSION AK138767.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2446) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A430057P12 FEATURES Location/Qualifiers source 1..2446 /clone="A430057P12" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A430057P12" /db_xref="MGI:3542747" /db_xref="taxon:10090" /dev_stage="0 day neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" misc_feature 1..2446 /note="hypothetical protein (evidence: CDS)" /note="putative" BASE COUNT 603 a 493 c 690 g 660 t ORIGIN 1 gggttccgtc accagacgaa atggcggagg ctgcggtggt ggcgtgggtt cgcggccccg 61 gtaccgtgtg gaaggcgctg ccgtgtgcct cggttgggtg ctccgtgcgc gatgtgatct 121 accgacactg ccaggaacag gaagttcccg tggaatgctt ctttgtgacg tgcaatggag 181 tcctcgttaa tgccggtgat aaggtgcagc atggagccgt gtacagtttg gagcccaggc 241 ttcgtggggg gaaaggaggt tttgggtcta tgcttcgagc acttggtgca cagatagaga 301 agacaaccaa tagagaagcc tgccgggatc tcagtgggag gagattacga gatgtcaatc 361 atgagaaagc gatggctgag tgggtaaaac agcaagctga gcgagaggct gaaaaggagc 421 ataggcgcct ggagaggctg cagcgaaagc ttgccgagcc tgcacactgc ttcaccagtc 481 ccgactacca gaggcagtgc catgagatgg ctgagcgtct ggaggactca gtcctcaaag 541 gtatgcaggc tgcatccagc aagatggtat cagcagaaat cactgagact cggaaacggc 601 ctaacaagtc aaaaacggac caggaaacta gtgcaaaaaa aaggaaaagg aaatgctttt 661 ggttgggcat ggatgggctg gaggctgccg aggggtccag tactggaagc tcagaggaca 721 gctcagagga tgacagtgag gatgctcctg ggacttcgga gcagagctgc tgtgctcggg 781 aagacggcat tgatgctgta gaggtggcag ccgaccgacc tggcagtcct cggagctcgg 841 cctctggtac acactctgag tcacctgaaa agcttcagtg ccccgtgacc gagcctgggc 901 agggcatttt ggagaacaca ggaactgagc caggagagac ctctgacaag gagtgcaacg 961 agaggaagac agtcacagac ccagaggaga cgccagcaag gaaggaaaca gagagtcatg 1021 aggccacaga aaggaccaaa agacaggaat gtctggtggg gacagagctg ccatggtttt 1081 gtctggagaa gacaggaaaa gtgtccctgc tgctaatctg gagggaaaca actcaggaga 1141 cacagctctt ggtctggaag cggtggatct gtcagcattc agctctgcag ccgagttgga 1201 gtcgctgggt ttggagaggc tcaagtgtga actgatggtc cttggactga agtgtggggg 1261 gaccctgcag gagcgcgcag ccaggctctt ctctgtcaga ggcctcacaa aggaactcat 1321 tgacccagct ttatttgcca agccttccaa ggggaagaag aagtgaattt ccttggcaca 1381 cttcctccgc tgtgacagac ttgtggcctg tgttcctttt gatactaaaa gccaattttt 1441 taataattcg gttctaacta gtctcttttc aaactagtct cttttcagtg gtacctgaac 1501 ttgaggtttt cgttggagga gaaaactttt gtatgttatt tttctttgtt tttgatgttt 1561 ttgtaagaga tactctgtag cccagactga ccaagaactg tgtggttcac tttggtctca 1621 aacttgcagt gatcctcctg tctcgcatga gctgctgtgc ctgctttgtc agaggtttat 1681 acatttcttt ggctttatat actgtgtcac ttgagtaaga tattttcaag aaatttattt 1741 gtataaccca aagcagtcag gtttgtagac acagatattc ataacattca ttttaaaaac 1801 ttgtctctct ttctaggaga gagaaagaga gagaatgaga atatgaatgt gtgtgtgtgt 1861 gtgtgtgtgt gagaccaggg catggagcct agctgcttcc aggcctctca ctggggattt 1921 ttattctagc tagggaccta ttttgtttgg ttttcaaaga atcagttttt tgtctttgtg 1981 gatttttctc agttgttgat ctcattggca tttgaattgt atttcctctc ctacatgcct 2041 tgtgtttatc atttttcttt agctccttaa gtctttgatc actgattata gattttattt 2101 ttattattat tagtgtattg cccaattagc aaatgtttgt gttttctgta aatgttttat 2161 tgatagtgac tctctgacta ttcaggacag aaagtacctg gcatccttgt tgtgactgac 2221 ccaggatagg gtctgacatg atctgtgctg tgtgtgttgg aaagaacgta ccatcagccg 2281 gcagcagggt gggttctgga cacctatcat gtgagtggtt ggtcggatcg gtcagatgac 2341 cgccttcgct ggttcatttt cataaggaac taagagcaaa atcaaatctc aattaggatt 2401 gtggcaattg ccttttttga gattaaaaat aacttcatca gcgtct //