LOCUS AK138649 2523 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330093C21 product:Ser-thr protein kinase PK428 homolog [Homo sapiens], full insert sequence. ACCESSION AK138649 VERSION AK138649.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2523) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A330093C21 FEATURES Location/Qualifiers source 1..2523 /clone="A330093C21" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A330093C21" /db_xref="MGI:3542548" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="spinal cord" CDS 823..>2523 /codon_start=1 /note="Ser-thr protein kinase PK428 homolog [Homo sapiens] (UniProt|Q99646, evidence: FASTY, 89.3%ID, 100%length, match=1646)" /note="putative" /protein_id="BAE23731.1" /transl_table=1 /translation="MKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDN NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDN ILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGRYGPECD WWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSENAKDLIRRLI CSREHRLGQNGIEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTDTSNFDVDDDCLKN SETMPPPTHTAFSGHHLPFVGFTYTSSCVLSDRSCLRVTAGPTSLDLDVSVQRTLDNN LATEAYERRIKRLEQEKLELTRKLQESTQTVQALQYSTVDGPLTASKDLEIKSLKEEI EKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKASEKQIKTLQQEREELNKLEVHT EALIAEASKDKKLREQSEHYSKQLENELEGLKQKQISYSPGICSIEHQQEITKLKTDL EKKSIFYEEEISKREGIHASEIKNLKKELHDSEGQQLALNKEILVLKDKLEKTRRESQ S" BASE COUNT 816 a 442 c 573 g 692 t ORIGIN 1 tttttttttt ttttttttta aggagtgttg actctttagt tcgttgtact tttaattatt 61 attctattta aatgtacaat ttaattgtat tattctctta aaatattaaa tctatatttt 121 atggaaactc accctcaaga tatatatgtt tatgggtgaa attggagacg cttccgttaa 181 gtgaggtgac tggtgtattg gatgtttaat tcagcaccgg cattgcatga cagttgttga 241 aataacaagt ggtttatttt taaaaaccac atctttaaac ttttaggttc agatagtaac 301 agtagacatc gtaagggcat ttaaaagaaa accagcagaa atcgaagcaa acatgtccgg 361 agaagtgcgt ttgaggcagt tggagcagtt tattttagat gggccagctc agaccaatgg 421 gcagtgcttc agtgtggaga cgctactgga catcctcatc tgtctttacg atgaatgcaa 481 taattctcca ttgagaagag agaagaacat tcttgaatat ctagaatggg ctaaaccatt 541 tacttctaaa gtgaagcaaa tgcgattaca tagagaagac tttgaaatat taaaggtgat 601 tggtcgagga gcttttgggg aggaaaacct ttaacttacg ccctgggtgt tacctgtcca 661 cagcttcctg gtggctcacc gcttctgcct gctccagcct tgctccggca gcttccaggc 721 ttctgggctt cagagcttgt tgtgaaagct tgctgctttg gcctgctacc cctgcttcag 781 gttgctgtag ttaaactaaa aaatgcagat aaagtattcg ccatgaaaat tctgaacaag 841 tgggaaatgc tgaaaagagc tgagacagcg tgctttcgtg aagagaggga tgtgttggta 901 aatggagaca gtaagtggat aaccactctg cactatgctt tccaggatga caataactta 961 tacctggtta tggattatta tgttggtggg gatttactta ctctgctcag caaatttgaa 1021 gatagattgc ctgaagagat ggctcggttt tacttggctg agatggtgat agccattgac 1081 tcagttcacc agctccacta tgttcacaga gacatcaaac ctgacaatat attgatggat 1141 atgaatggac atattcgttt agcagatttt ggttcttgtc tgaagctgat ggaagatgga 1201 acggtccagt cctcggtggc agttggaact ccagattata tttctccgga aatccttcag 1261 gctatggaag acggaaaagg cagatatgga ccagagtgtg actggtggtc cttgggggtc 1321 tgtatgtatg agatgcttta cggagaaaca ccattctatg cagagtctct ggtggagaca 1381 tatggaaaaa ttatgaatca caaagagcgg tttcagtttc cagcccaagt gacagacgtg 1441 tccgaaaatg ctaaagatct tattcgaaga ctcatttgta gtagagaaca tcgacttggc 1501 caaaatggaa tagaagactt taagaagcat ccattcttca gtggaattga ttgggataac 1561 attcggaatt gtgaagcacc ttacatccca gaagttagta gcccgacaga tacgtcaaat 1621 tttgatgtgg atgacgactg tttaaaaaat tctgaaacaa tgcccccacc aacacatact 1681 gcattttctg gccatcatct accatttgtt ggttttacat atactagtag ctgtgttctt 1741 tctgatcgga gctgtttaag agtcacagca ggccccacct cattggacct tgatgtcagt 1801 gtccagagga ctctagacaa taacttagca actgaggctt atgaaaggag aattaagcgg 1861 cttgagcagg aaaagcttga actgactaga aaacttcaag agtcaacaca gactgttcaa 1921 gctctgcaat attcaactgt tgatggtcca ctaacggcaa gcaaagattt agaaattaaa 1981 agtctgaaag aagagattga aaaactaagg aaacaagtag cagaagtgaa tcatttggaa 2041 caacaacttg aagaagctaa ttctgtgaga cgagaactag atgatgcttt caggcaaatc 2101 aaagcttctg aaaaacaaat caaaactttg cagcaggaaa gagaagaact aaataagctg 2161 gaagttcaca ccgaagctct aattgctgaa gcatcaaagg acaagaagct ccgagagcag 2221 agcgaacatt attctaagca actggaaaac gagttggagg gcctgaagca aaaacaaatt 2281 agttactcac caggaatatg cagcatagaa catcagcaag agataactaa actgaaaact 2341 gacttggaaa agaaaagtat cttttatgaa gaagaaattt ctaaaagaga aggaattcac 2401 gcaagtgaga ttaaaaacct gaagaaggag ctgcatgact cagaaggcca gcagcttgct 2461 ctcaacaaag agattctggt tttaaaagac aaattggaaa aaaccaggag agaaagtcaa 2521 agt //